/ New distfiles found via the portscout scanner Sat, 5 Jul 2025 19:46:04 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.15 to 39.31 jwb@freebsd.org biology/bbmap/39.15/39.31 Fri, 4 Jul 2025 03:43:55 -0000 Sat, 5 Jul 2025 02:45:29 -0000 39.15 biology https://cfhcable.dl.sourceforge.net/project/bbmap/BBMap_39.31.tar.gz Sat, 5 Jul 2025 02:02:47 -0000 http://www.freshports.org/biology/bbmap/ 39.31 bbmap http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 483 jwb@freebsd.org biology/ucsc-userapps/474/483 Sat, 28 Jun 2025 02:47:16 -0000 http://www.freshports.org/biology/ucsc-userapps/ ucsc-userapps http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps 483 474 biology https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v483.src.tgz Sat, 5 Jul 2025 02:02:48 -0000 Sat, 5 Jul 2025 02:45:15 -0000 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 Sat, 5 Jul 2025 02:02:48 -0000 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz 0.5.2 biology Sat, 5 Jul 2025 03:26:13 -0000 py-pywgsim 0.6.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim http://www.freshports.org/biology/py-pywgsim/ /jwb@freebsd.org.html Update found for port science/csvtk: version 0.33.0 to 0.34.0 jwb@freebsd.org science/csvtk/0.33.0/0.34.0 Mon, 2 Jun 2025 03:10:46 -0000 Sat, 5 Jul 2025 03:23:43 -0000 0.33.0 science https://proxy.golang.org/github.com/shenwei356/csvtk/@v/v0.34.0.zip Sat, 5 Jul 2025 02:20:36 -0000 http://www.freshports.org/science/csvtk/ 0.34.0 csvtk http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 1.3.9 biology Sat, 5 Jul 2025 02:02:53 -0000 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ Sat, 5 Jul 2025 02:59:17 -0000 http://www.freshports.org/biology/freebayes/ freebayes http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes v1.3.10 /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ Sat, 5 Jul 2025 02:02:49 -0000 biology 1.20 Sat, 5 Jul 2025 03:01:52 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha bio-mocha 1.21 http://www.freshports.org/biology/bio-mocha/ /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.14 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.14 Mon, 19 May 2025 02:38:55 -0000 Sat, 5 Jul 2025 03:22:36 -0000 1.0.13 biology Sat, 5 Jul 2025 02:02:56 -0000 https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.14?dummy=/ http://www.freshports.org/biology/vcflib/ v1.0.14 vcflib http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 http://www.freshports.org/biology/py-dna-features-viewer/ 3.1.5 py-dna-features-viewer http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer Sat, 5 Jul 2025 02:52:58 -0000 3.1.3 biology Sat, 5 Jul 2025 02:02:48 -0000 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 http://www.freshports.org/biology/subread/ 2.1.1 subread http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread 2.1.0 biology Sat, 5 Jul 2025 02:02:47 -0000 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz Sat, 5 Jul 2025 02:51:19 -0000 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.2.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.2.1/vdb-4760-2.9.7 Sat, 22 Mar 2025 03:03:00 -0000 Sat, 5 Jul 2025 03:22:36 -0000 Sat, 5 Jul 2025 02:02:56 -0000 https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ 3.2.1 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools sra-tools vdb-4760-2.9.7 http://www.freshports.org/biology/sra-tools/ /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 Sat, 5 Jul 2025 02:49:20 -0000 17-b804f biology https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ Sat, 5 Jul 2025 02:02:51 -0000 http://www.freshports.org/biology/mmseqs2/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 mmseqs2 vnatbiotech /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 http://www.freshports.org/biology/stacks/ stacks http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks 2.69 2.68 biology https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz Sat, 5 Jul 2025 02:02:58 -0000 Sat, 5 Jul 2025 03:02:42 -0000 /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 ddocent http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent v2.9.8 http://www.freshports.org/biology/ddocent/ Sat, 5 Jul 2025 03:08:27 -0000 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ Sat, 5 Jul 2025 02:02:54 -0000 2.7.8 biology /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 1.3.5 biology https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ Sat, 5 Jul 2025 02:02:56 -0000 Sat, 5 Jul 2025 02:49:48 -0000 http://www.freshports.org/biology/bifrost/ paper bifrost http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.6.1 to 1.7.4 jwb@freebsd.org devel/py-rich-click/1.6.1/1.7.4 Wed, 13 Mar 2024 03:44:49 -0000 py-rich-click 1.7.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click http://www.freshports.org/devel/py-rich-click/ https://pypi.org/packages/source/r/rich-click/rich-click-1.7.4.tar.gz Sat, 5 Jul 2025 02:09:18 -0000 devel 1.6.1 Sat, 5 Jul 2025 03:16:34 -0000 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ Sat, 5 Jul 2025 02:24:36 -0000 0.5.8 sysutils Sat, 5 Jul 2025 02:45:31 -0000 0.5.9 spcm http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm http://www.freshports.org/sysutils/spcm/ /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 biology 3.5.2 https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz Sat, 5 Jul 2025 02:02:55 -0000 Sat, 5 Jul 2025 03:03:35 -0000 http://www.freshports.org/biology/py-deeptools/ 3.5.3 py-deeptools http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 bfc http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc submitted-v1 http://www.freshports.org/biology/bfc/ Sat, 5 Jul 2025 02:02:47 -0000 https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ g20150417 biology Sat, 5 Jul 2025 03:03:44 -0000 /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 1.0 lnphost http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost http://www.freshports.org/devel/lnphost/ Sat, 5 Jul 2025 02:07:16 -0000 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip 1.0a devel Sat, 5 Jul 2025 02:46:08 -0000