Portscout Port Updates / New distfiles found via the portscout scanner Sun, 29 Jan 2023 10:20:06 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott biology/p5-transdecoder: 5.4.0 -> transdecoder-v5.7.0 /jwb@freebsd.org.html Update found for port biology/p5-transdecoder: version 5.4.0 to transdecoder-v5.7.0 jwb@freebsd.org biology/p5-transdecoder/5.4.0/transdecoder-v5.7.0 Sat, 28 Jan 2023 12:02:57 -0000 Sat, 28 Jan 2023 12:02:57 -0000 5.4.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fp5-transdecoder http://www.freshports.org/biology/p5-transdecoder/ https://codeload.github.com/https://api.github.com/repos/TransDecoder/TransDecoder/TransDecoder-v5.7.0?dummy=/ transdecoder-v5.7.0 p5-transdecoder Sun, 29 Jan 2023 02:12:14 -0000 biology biology/tabixpp: 1.0.0-10 -> v1.1.2 /jwb@freebsd.org.html Update found for port biology/tabixpp: version 1.0.0-10 to v1.1.2 jwb@freebsd.org biology/tabixpp/1.0.0-10/v1.1.2 Thu, 19 Jan 2023 15:11:21 -0000 biology Sun, 29 Jan 2023 02:12:02 -0000 tabixpp v1.1.2 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ftabixpp http://www.freshports.org/biology/tabixpp/ https://codeload.github.com/https://api.github.com/repos/vcflib/tabixpp/v1.1.2?dummy=/ 1.0.0-10 Sun, 29 Jan 2023 09:57:42 -0000 biology/ucsc-userapps: 414 -> 442 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 414 to 442 jwb@freebsd.org biology/ucsc-userapps/414/442 Wed, 18 Jan 2023 04:06:58 -0000 442 biology Sun, 29 Jan 2023 02:12:02 -0000 ucsc-userapps Sun, 29 Jan 2023 07:37:33 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps http://www.freshports.org/biology/ucsc-userapps/ http://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v442.src.tgz 414 biology/py-multiqc: 1.10 -> 1.14 /jwb@freebsd.org.html Update found for port biology/py-multiqc: version 1.10 to 1.14 jwb@freebsd.org biology/py-multiqc/1.10/1.14 Mon, 9 Jan 2023 09:18:16 -0000 https://pypi.org/packages/source/m/multiqc/multiqc-1.14.tar.gz http://www.freshports.org/biology/py-multiqc/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-multiqc 1.10 Sun, 29 Jan 2023 06:41:51 -0000 biology Sun, 29 Jan 2023 02:12:04 -0000 py-multiqc 1.14 biology/sra-tools: 2.11.0 -> 3.0.3 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 2.11.0 to 3.0.3 jwb@freebsd.org biology/sra-tools/2.11.0/3.0.3 Wed, 4 Jan 2023 03:41:43 -0000 https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/3.0.3?dummy=/ http://www.freshports.org/biology/sra-tools/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools 2.11.0 Sat, 28 Jan 2023 08:53:11 -0000 biology Sun, 29 Jan 2023 02:12:12 -0000 sra-tools 3.0.3 biology/py-dna-features-viewer: 3.1.1 -> 3.1.2 /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.1 to 3.1.2 jwb@freebsd.org biology/py-dna-features-viewer/3.1.1/3.1.2 Sun, 18 Dec 2022 11:25:27 -0000 3.1.2 biology Sun, 29 Jan 2023 02:12:03 -0000 py-dna-features-viewer Sat, 28 Jan 2023 06:23:40 -0000 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.2.tar.gz http://www.freshports.org/biology/py-dna-features-viewer/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer 3.1.1 biology/py-cutadapt: 3.3 -> 4.2 /jwb@freebsd.org.html Update found for port biology/py-cutadapt: version 3.3 to 4.2 jwb@freebsd.org biology/py-cutadapt/3.3/4.2 Sat, 10 Dec 2022 05:31:36 -0000 4.2 biology Sun, 29 Jan 2023 02:12:01 -0000 py-cutadapt Sun, 29 Jan 2023 05:29:58 -0000 http://www.freshports.org/biology/py-cutadapt/ https://pypi.org/packages/source/c/cutadapt/cutadapt-4.2.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-cutadapt 3.3 biology/py-dnaio: 0.5.1 -> 0.10.0 /jwb@freebsd.org.html Update found for port biology/py-dnaio: version 0.5.1 to 0.10.0 jwb@freebsd.org biology/py-dnaio/0.5.1/0.10.0 Tue, 6 Dec 2022 07:15:45 -0000 https://pypi.org/packages/source/d/dnaio/dnaio-0.10.0.tar.gz http://www.freshports.org/biology/py-dnaio/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dnaio 0.5.1 Sun, 29 Jan 2023 03:26:05 -0000 Sun, 29 Jan 2023 02:12:11 -0000 biology py-dnaio 0.10.0 archivers/py-xopen: 1.1.0 -> 1.7.0 /jwb@freebsd.org.html Update found for port archivers/py-xopen: version 1.1.0 to 1.7.0 jwb@freebsd.org archivers/py-xopen/1.1.0/1.7.0 Thu, 3 Nov 2022 09:12:29 -0000 1.1.0 https://pypi.org/packages/source/x/xopen/xopen-1.7.0.tar.gz http://www.freshports.org/archivers/py-xopen/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=archivers%2Fpy-xopen Sat, 28 Jan 2023 07:03:55 -0000 py-xopen Sun, 29 Jan 2023 02:10:21 -0000 archivers 1.7.0 biology/bbmap: 38.92 -> 39.01 /jwb@freebsd.org.html Update found for port biology/bbmap: version 38.92 to 39.01 jwb@freebsd.org biology/bbmap/38.92/39.01 Thu, 6 Oct 2022 04:20:19 -0000 39.01 biology Sun, 29 Jan 2023 02:12:01 -0000 bbmap Sat, 28 Jan 2023 11:30:17 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap https://excellmedia.dl.sourceforge.net/project/bbmap/BBMap_39.01.tar.gz http://www.freshports.org/biology/bbmap/ 38.92 science/csvtk: 0.24.0 -> 0.25.0 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.24.0 to 0.25.0 jwb@freebsd.org science/csvtk/0.24.0/0.25.0 Fri, 23 Sep 2022 03:46:35 -0000 csvtk Sun, 29 Jan 2023 02:34:12 -0000 science 0.25.0 0.24.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk https://proxy.golang.org/github.com/shenwei356/csvtk/@v/v0.25.0.zip http://www.freshports.org/science/csvtk/ Sun, 29 Jan 2023 04:08:54 -0000 devel/R-cran-optparse: 1.6.6 -> 1.7.3 /jwb@freebsd.org.html Update found for port devel/R-cran-optparse: version 1.6.6 to 1.7.3 jwb@freebsd.org devel/R-cran-optparse/1.6.6/1.7.3 Thu, 21 Jul 2022 02:48:56 -0000 Sun, 29 Jan 2023 09:01:24 -0000 1.6.6 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2FR-cran-optparse http://www.freshports.org/devel/R-cran-optparse/ https://cloud.r-project.org/src/contrib/optparse_1.7.3.tar.gz 1.7.3 R-cran-optparse devel Sun, 29 Jan 2023 02:16:47 -0000 biology/mmseqs2: 13-45111 -> vnatbiotech /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 13-45111 to vnatbiotech jwb@freebsd.org biology/mmseqs2/13-45111/vnatbiotech Tue, 5 Apr 2022 08:20:08 -0000 Sat, 28 Jan 2023 03:49:17 -0000 13-45111 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ http://www.freshports.org/biology/mmseqs2/ vnatbiotech mmseqs2 biology Sun, 29 Jan 2023 02:12:06 -0000 biology/ncbi-blast+: 2.12.0 -> 2.13.0 /jwb@freebsd.org.html Update found for port biology/ncbi-blast+: version 2.12.0 to 2.13.0 jwb@freebsd.org biology/ncbi-blast+/2.12.0/2.13.0 Tue, 15 Mar 2022 02:52:04 -0000 Sat, 28 Jan 2023 09:16:03 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fncbi-blast+ http://www.freshports.org/biology/ncbi-blast+/ https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.13.0+-src.tar.gz 2.12.0 2.13.0 Sun, 29 Jan 2023 02:12:05 -0000 biology ncbi-blast+ biology/ddocent: 2.7.8 -> v2.9.4 /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.4 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.4 Fri, 4 Mar 2022 05:29:36 -0000 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.4?dummy=/ http://www.freshports.org/biology/ddocent/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent 2.7.8 Sat, 28 Jan 2023 09:28:39 -0000 biology Sun, 29 Jan 2023 02:12:09 -0000 ddocent v2.9.4 biology/py-crossmap: 0.5.4 -> 0.6.1 /jwb@freebsd.org.html Update found for port biology/py-crossmap: version 0.5.4 to 0.6.1 jwb@freebsd.org biology/py-crossmap/0.5.4/0.6.1 Wed, 1 Dec 2021 10:59:47 -0000 Sat, 28 Jan 2023 04:18:39 -0000 0.5.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-crossmap http://www.freshports.org/biology/py-crossmap/ https://pypi.org/packages/source/C/CrossMap/CrossMap-0.6.1.tar.gz 0.6.1 py-crossmap biology Sun, 29 Jan 2023 02:12:09 -0000 biology/gemma: 0.98.3 -> v0.98.5 /jwb@freebsd.org.html Update found for port biology/gemma: version 0.98.3 to v0.98.5 jwb@freebsd.org biology/gemma/0.98.3/v0.98.5 Thu, 26 Aug 2021 04:04:38 -0000 v0.98.5 biology Sun, 29 Jan 2023 02:12:15 -0000 gemma Sat, 28 Jan 2023 03:56:48 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fgemma http://www.freshports.org/biology/gemma/ https://codeload.github.com/https://api.github.com/repos/genetics-statistics/GEMMA/v0.98.5?dummy=/ 0.98.3 biology/bfc: g20150417 -> submitted-v1 /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 Sat, 28 Jan 2023 12:06:14 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc http://www.freshports.org/biology/bfc/ https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ g20150417 submitted-v1 Sun, 29 Jan 2023 02:12:01 -0000 biology bfc biology/p5-TrimGalore: 0.6.5 -> 0.6.7 /jwb@freebsd.org.html Update found for port biology/p5-TrimGalore: version 0.6.5 to 0.6.7 jwb@freebsd.org biology/p5-TrimGalore/0.6.5/0.6.7 Sat, 24 Jul 2021 05:33:02 -0000 p5-TrimGalore Sun, 29 Jan 2023 02:12:01 -0000 biology 0.6.7 0.6.5 https://codeload.github.com/https://api.github.com/repos/FelixKrueger/TrimGalore/0.6.7?dummy=/ http://www.freshports.org/biology/p5-TrimGalore/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fp5-TrimGalore Sat, 28 Jan 2023 14:14:16 -0000 biology/subread: 2.0.2 -> 2.0.3 /jwb@freebsd.org.html Update found for port biology/subread: version 2.0.2 to 2.0.3 jwb@freebsd.org biology/subread/2.0.2/2.0.3 Thu, 15 Jul 2021 05:35:07 -0000 Sun, 29 Jan 2023 08:23:08 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread http://www.freshports.org/biology/subread/ https://superb-dca2.dl.sourceforge.net/project/subread/subread-2.0.3/subread-2.0.3-source.tar.gz 2.0.2 2.0.3 biology Sun, 29 Jan 2023 02:12:01 -0000 subread science/packmol: 18.169 -> 20.010 /jwb@freebsd.org.html Update found for port science/packmol: version 18.169 to 20.010 jwb@freebsd.org science/packmol/18.169/20.010 Sat, 11 Jan 2020 04:25:23 -0000 Sun, 29 Jan 2023 04:08:47 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fpackmol http://www.freshports.org/science/packmol/ https://codeload.github.com/https://api.github.com/repos/mcubeg/packmol/20.010?dummy=/ 18.169 20.010 science Sun, 29 Jan 2023 02:33:59 -0000 packmol biology/stacks: 2.4 -> 2.5 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.4 to 2.5 jwb@freebsd.org biology/stacks/2.4/2.5 Tue, 17 Dec 2019 02:49:18 -0000 Sun, 29 Jan 2023 08:09:39 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks http://www.freshports.org/biology/stacks/ http://catchenlab.life.illinois.edu/stacks/source/stacks-2.5.tar.gz 2.4 2.5 Sun, 29 Jan 2023 02:12:15 -0000 biology stacks biology/fasttree: 2.1.10 -> 2.1.11 /jwb@freebsd.org.html Update found for port biology/fasttree: version 2.1.10 to 2.1.11 jwb@freebsd.org biology/fasttree/2.1.10/2.1.11 Sat, 18 May 2019 04:35:38 -0000 2.1.11 fasttree biology Sun, 29 Jan 2023 02:12:02 -0000 Sun, 29 Jan 2023 08:55:36 -0000 2.1.10 http://www.freshports.org/biology/fasttree/ http://www.microbesonline.org/fasttree/FastTree-2.1.11.c http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffasttree devel/yaggo: 1.5.9 -> v1.5.10 /jwb@freebsd.org.html Update found for port devel/yaggo: version 1.5.9 to v1.5.10 jwb@freebsd.org devel/yaggo/1.5.9/v1.5.10 Fri, 7 Jul 2017 05:29:47 -0000 v1.5.10 yaggo devel Sun, 29 Jan 2023 02:16:17 -0000 Sun, 29 Jan 2023 03:14:12 -0000 1.5.9 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fyaggo https://codeload.github.com/https://api.github.com/repos/gmarcais/yaggo/v1.5.10?dummy=/ http://www.freshports.org/devel/yaggo/ www/webbrowser: 0.3 -> 0.4 /jwb@freebsd.org.html Update found for port www/webbrowser: version 0.3 to 0.4 jwb@freebsd.org www/webbrowser/0.3/0.4 Wed, 10 Feb 2016 08:46:38 -0000 Sun, 29 Jan 2023 02:39:01 -0000 www webbrowser 0.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=www%2Fwebbrowser http://acadix.biz/Ports/distfiles/webbrowser-0.4.tar.xz http://www.freshports.org/www/webbrowser/ 0.3 Sun, 29 Jan 2023 07:44:16 -0000 devel/roboctl: 0.3.8 -> 0.3.9 /jwb@freebsd.org.html Update found for port devel/roboctl: version 0.3.8 to 0.3.9 jwb@freebsd.org devel/roboctl/0.3.8/0.3.9 Wed, 28 Oct 2015 05:07:41 -0000 Sun, 29 Jan 2023 05:21:19 -0000 0.3.8 http://acadix.biz/Ports/distfiles/roboctl-0.3.9.tar.xz http://www.freshports.org/devel/roboctl/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Froboctl 0.3.9 roboctl Sun, 29 Jan 2023 02:18:31 -0000 devel sysutils/endian: 1.1 -> 1.2 /jwb@freebsd.org.html Update found for port sysutils/endian: version 1.1 to 1.2 jwb@freebsd.org sysutils/endian/1.1/1.2 Sat, 6 Jun 2015 06:52:26 -0000 Sun, 29 Jan 2023 02:46:21 -0000 http://personalpages.tds.net/~jwbacon/Ports/distfiles/endian-1.2.tar.xz http://www.freshports.org/sysutils/endian/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fendian 1.1 1.2 Sun, 29 Jan 2023 02:36:48 -0000 sysutils endian devel/lnphost: 1.0a -> 1.0 /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 Sun, 29 Jan 2023 02:17:19 -0000 devel lnphost 1.0 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip http://www.freshports.org/devel/lnphost/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost 1.0a Sun, 29 Jan 2023 05:55:22 -0000 devel/libgamepad: 0.1.2 -> 0.1.3 /jwb@freebsd.org.html Update found for port devel/libgamepad: version 0.1.2 to 0.1.3 jwb@freebsd.org devel/libgamepad/0.1.2/0.1.3 Mon, 2 Jun 2014 06:12:53 -0000 Sun, 29 Jan 2023 07:19:29 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flibgamepad http://www.freshports.org/devel/libgamepad/ http://acadix.biz/Ports/distfiles/libgamepad-0.1.3.tar.xz 0.1.2 0.1.3 devel Sun, 29 Jan 2023 02:19:31 -0000 libgamepad