/ New distfiles found via the portscout scanner Fri, 8 May 2026 12:18:40 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.38.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.38.0 Fri, 8 May 2026 03:33:43 -0000 net 2.38.0 http://www.freshports.org/net/py-google-cloud-pubsub/ https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.38.0.tar.gz Fri, 8 May 2026 02:29:40 -0000 Fri, 8 May 2026 03:33:43 -0000 py-google-cloud-pubsub http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub 2.32.0 /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.84 jwb@freebsd.org biology/bbmap/39.34/39.84 Tue, 5 May 2026 03:43:33 -0000 https://phoenixnap.dl.sourceforge.net/project/bbmap/BBMap_39.84.tar.gz Fri, 8 May 2026 02:03:11 -0000 bbmap Fri, 8 May 2026 03:35:50 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap 39.34 biology 39.84 http://www.freshports.org/biology/bbmap/ /jwb@freebsd.org.html Update found for port archivers/streamvbyte: version 2.0.0 to v3.0.0 jwb@freebsd.org archivers/streamvbyte/2.0.0/v3.0.0 Fri, 1 May 2026 04:13:17 -0000 https://codeload.github.com/https://api.github.com/repos/fast-pack/streamvbyte/v3.0.0?dummy=/ Fri, 8 May 2026 02:01:12 -0000 2.0.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=archivers%2Fstreamvbyte streamvbyte Fri, 8 May 2026 02:56:04 -0000 archivers v3.0.0 http://www.freshports.org/archivers/streamvbyte/ /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 497 jwb@freebsd.org biology/ucsc-userapps/474/497 Fri, 1 May 2026 02:54:54 -0000 biology 497 http://www.freshports.org/biology/ucsc-userapps/ https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v497.src.tgz Fri, 8 May 2026 02:03:12 -0000 474 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps ucsc-userapps Fri, 8 May 2026 03:35:42 -0000 /jwb@freebsd.org.html Update found for port devel/R-cran-getopt: version 1.20.4 to 1.21.1 jwb@freebsd.org devel/R-cran-getopt/1.20.4/1.21.1 Tue, 28 Apr 2026 03:17:18 -0000 https://stat.ethz.ch/CRAN/src/contrib/getopt_1.21.1.tar.gz R-cran-getopt Fri, 8 May 2026 02:52:20 -0000 1.20.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2FR-cran-getopt Fri, 8 May 2026 02:14:02 -0000 1.21.1 devel http://www.freshports.org/devel/R-cran-getopt/ /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.3.0 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.3.0 Thu, 23 Apr 2026 03:54:22 -0000 http://www.freshports.org/devel/mongo-cxx-driver/ devel r4.3.0 Fri, 8 May 2026 02:09:58 -0000 mongo-cxx-driver Fri, 8 May 2026 03:18:57 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver 4.0.0 https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.3.0?dummy=/ /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 1.00.0 comms http://www.freshports.org/comms/cutecom/ https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom 0.60.0 cutecom Fri, 8 May 2026 03:20:30 -0000 Fri, 8 May 2026 02:04:02 -0000 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.43.0 jwb@freebsd.org science/csvtk/0.36.0/v0.43.0 Thu, 9 Apr 2026 02:38:41 -0000 https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.43.0?dummy=/ Fri, 8 May 2026 02:31:30 -0000 0.36.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk Fri, 8 May 2026 02:50:54 -0000 csvtk science v0.43.0 http://www.freshports.org/science/csvtk/ /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Fri, 27 Mar 2026 02:40:38 -0000 https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ Fri, 8 May 2026 02:03:23 -0000 Fri, 8 May 2026 02:44:45 -0000 sra-tools http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools 3.4.1 biology vdb-4760-2.9.7 http://www.freshports.org/biology/sra-tools/ /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 21 Mar 2026 03:22:09 -0000 http://www.freshports.org/biology/vcflib/ v1.0.15 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib 1.0.13 Fri, 8 May 2026 03:22:00 -0000 vcflib Fri, 8 May 2026 02:03:22 -0000 https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.15?dummy=/ /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v1.11.4 jwb@freebsd.org biology/salmon/1.10.3/v1.11.4 Thu, 12 Mar 2026 03:05:16 -0000 Fri, 8 May 2026 02:03:10 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon 1.10.3 salmon Fri, 8 May 2026 03:32:42 -0000 https://codeload.github.com/https://api.github.com/repos/COMBINE-lab/salmon/v1.11.4?dummy=/ http://www.freshports.org/biology/salmon/ biology v1.11.4 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 0.5.2 py-pydeseq2 Fri, 8 May 2026 02:49:49 -0000 Fri, 8 May 2026 02:03:22 -0000 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz http://www.freshports.org/biology/py-pydeseq2/ 0.5.4 biology /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz 0.5.2 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim Fri, 8 May 2026 03:21:22 -0000 py-pywgsim Fri, 8 May 2026 02:03:12 -0000 0.6.0 biology http://www.freshports.org/biology/py-pywgsim/ /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes 1.3.9 Fri, 8 May 2026 03:43:05 -0000 freebayes Fri, 8 May 2026 02:03:19 -0000 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ http://www.freshports.org/biology/freebayes/ v1.3.10 biology /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 http://www.freshports.org/biology/bio-mocha/ biology 1.21 Fri, 8 May 2026 02:03:14 -0000 1.20 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha bio-mocha Fri, 8 May 2026 03:52:50 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz Fri, 8 May 2026 02:03:13 -0000 Fri, 8 May 2026 03:17:20 -0000 py-dna-features-viewer 3.1.3 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer biology 3.1.5 http://www.freshports.org/biology/py-dna-features-viewer/ /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 2.1.1 biology http://www.freshports.org/biology/subread/ https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread 2.1.0 subread Fri, 8 May 2026 03:04:29 -0000 Fri, 8 May 2026 02:03:11 -0000 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ Fri, 8 May 2026 02:03:16 -0000 Fri, 8 May 2026 03:43:02 -0000 mmseqs2 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 17-b804f biology vnatbiotech http://www.freshports.org/biology/mmseqs2/ /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 http://www.freshports.org/biology/stacks/ 2.69 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks 2.68 Fri, 8 May 2026 03:04:37 -0000 stacks Fri, 8 May 2026 02:03:26 -0000 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 http://www.freshports.org/biology/ddocent/ biology v2.9.8 Fri, 8 May 2026 02:03:20 -0000 2.7.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent ddocent Fri, 8 May 2026 03:45:20 -0000 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ Fri, 8 May 2026 03:31:07 -0000 bifrost 1.3.5 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost Fri, 8 May 2026 02:03:23 -0000 paper biology http://www.freshports.org/biology/bifrost/ /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 Fri, 8 May 2026 02:35:01 -0000 Fri, 8 May 2026 04:05:18 -0000 spcm 0.5.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ http://www.freshports.org/sysutils/spcm/ sysutils 0.5.9 /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 biology submitted-v1 http://www.freshports.org/biology/bfc/ https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ Fri, 8 May 2026 02:03:11 -0000 g20150417 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc Fri, 8 May 2026 02:55:31 -0000 bfc /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 lnphost Fri, 8 May 2026 02:42:29 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost 1.0a Fri, 8 May 2026 02:11:29 -0000 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip http://www.freshports.org/devel/lnphost/ 1.0 devel