/ New distfiles found via the portscout scanner Wed, 30 Sep 2026 12:24:10 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v2.8.0 jwb@freebsd.org biology/salmon/1.10.3/v2.8.0 Sat, 26 Sep 2026 04:38:23 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon salmon 1.10.3 biology Wed, 30 Sep 2026 02:03:05 -0000 http://www.freshports.org/biology/salmon/ https://api.github.com/repos/COMBINE-lab/salmon/tarball/v2.8.0 v2.8.0 Wed, 30 Sep 2026 03:29:06 -0000 /jwb@freebsd.org.html Update found for port science/orthanc-postgresql: version 10.3 to 11.0 jwb@freebsd.org science/orthanc-postgresql/10.3/11.0 Sun, 20 Sep 2026 03:20:20 -0000 orthanc-postgresql 10.3 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-postgresql http://www.freshports.org/science/orthanc-postgresql/ Wed, 30 Sep 2026 02:23:30 -0000 https://orthanc.uclouvain.be/downloads/sources/orthanc-postgresql/OrthancPostgreSQL-11.0.tar.gz 11.0 Wed, 30 Sep 2026 03:35:06 -0000 science /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.5.3 to r4.6.0 jwb@freebsd.org devel/mongo-cxx-driver/4.5.3/r4.6.0 Thu, 17 Sep 2026 04:17:07 -0000 mongo-cxx-driver 4.5.3 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver http://www.freshports.org/devel/mongo-cxx-driver/ Wed, 30 Sep 2026 02:07:45 -0000 https://api.github.com/repos/mongodb/mongo-cxx-driver/tarball/r4.6.0 Wed, 30 Sep 2026 03:56:03 -0000 r4.6.0 devel /jwb@freebsd.org.html Update found for port www/py-choreographer: version 1.3.0 to 1.4.0 jwb@freebsd.org www/py-choreographer/1.3.0/1.4.0 Thu, 17 Sep 2026 03:01:15 -0000 py-choreographer 1.3.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=www%2Fpy-choreographer http://www.freshports.org/www/py-choreographer/ Wed, 30 Sep 2026 02:34:34 -0000 https://pypi.org/packages/source/c/choreographer/choreographer-1.4.0.tar.gz Wed, 30 Sep 2026 03:01:57 -0000 1.4.0 www /jwb@freebsd.org.html Update found for port science/csvtk: version 0.37.0 to v0.48.0 jwb@freebsd.org science/csvtk/0.37.0/v0.48.0 Wed, 9 Sep 2026 03:34:34 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk 0.37.0 csvtk science Wed, 30 Sep 2026 02:49:40 -0000 v0.48.0 Wed, 30 Sep 2026 02:23:13 -0000 http://www.freshports.org/science/csvtk/ https://api.github.com/repos/golang/sys/tarball/refs/tags/v0.48.0 /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.6 to 4.0.0 jwb@freebsd.org biology/py-deeptools/3.5.6/4.0.0 Sun, 6 Sep 2026 03:26:18 -0000 biology http://www.freshports.org/biology/py-deeptools/ Wed, 30 Sep 2026 02:03:14 -0000 https://pypi.org/packages/source/d/deeptools/deeptools-4.0.0.tar.gz 4.0.0 Wed, 30 Sep 2026 03:57:54 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools py-deeptools 3.5.6 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.9 to paper jwb@freebsd.org biology/bifrost/1.3.9/paper Wed, 12 Aug 2026 04:01:36 -0000 biology Wed, 30 Sep 2026 02:03:16 -0000 http://www.freshports.org/biology/bifrost/ https://api.github.com/repos/pmelsted/bifrost/tarball/paper Wed, 30 Sep 2026 04:18:35 -0000 paper http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost bifrost 1.3.9 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sat, 20 Jun 2026 19:25:28 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 17-b804f mmseqs2 biology vnatbiotech Wed, 30 Sep 2026 03:38:10 -0000 https://api.github.com/repos/soedinglab/MMseqs2/tarball/vNatBiotech Wed, 30 Sep 2026 02:03:10 -0000 http://www.freshports.org/biology/mmseqs2/ /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Sat, 20 Jun 2026 18:46:14 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc g20150417 bfc biology submitted-v1 Wed, 30 Sep 2026 03:21:45 -0000 Wed, 30 Sep 2026 02:03:05 -0000 http://www.freshports.org/biology/bfc/ https://api.github.com/repos/lh3/bfc/tarball/refs/tags/submitted-v1 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 20 Jun 2026 18:45:48 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib 1.0.13 vcflib biology v1.0.15 Wed, 30 Sep 2026 04:40:05 -0000 http://www.freshports.org/biology/vcflib/ Wed, 30 Sep 2026 02:03:15 -0000 https://api.github.com/repos/vcflib/vcflib/tarball/v1.0.15 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Sat, 20 Jun 2026 18:12:59 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools sra-tools 3.4.1 biology http://www.freshports.org/biology/sra-tools/ Wed, 30 Sep 2026 02:03:16 -0000 https://api.github.com/repos/ncbi/sra-tools/tarball/refs/tags/VDB-4760-2.9.7 vdb-4760-2.9.7 Wed, 30 Sep 2026 03:51:12 -0000 /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 1.00.0 Wed, 30 Sep 2026 04:00:35 -0000 http://www.freshports.org/comms/cutecom/ Wed, 30 Sep 2026 02:03:53 -0000 https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 comms 0.60.0 cutecom http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 2.68 stacks http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks Wed, 30 Sep 2026 03:22:59 -0000 2.69 http://www.freshports.org/biology/stacks/ Wed, 30 Sep 2026 02:03:18 -0000 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz biology