/ New distfiles found via the portscout scanner Sun, 1 Mar 2026 05:58:39 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 494 jwb@freebsd.org biology/ucsc-userapps/474/494 Sat, 28 Feb 2026 03:11:10 -0000 http://www.freshports.org/biology/ucsc-userapps/ https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v494.src.tgz biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps Sun, 1 Mar 2026 02:35:18 -0000 Sun, 1 Mar 2026 02:02:49 -0000 ucsc-userapps 494 474 /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.77 jwb@freebsd.org biology/bbmap/39.34/39.77 Fri, 27 Feb 2026 02:47:31 -0000 39.77 bbmap 39.34 Sun, 1 Mar 2026 03:43:40 -0000 Sun, 1 Mar 2026 02:02:48 -0000 http://www.freshports.org/biology/bbmap/ https://cfhcable.dl.sourceforge.net/project/bbmap/BBMap_39.77.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap biology /jwb@freebsd.org.html Update found for port biology/kallisto: version 0.51.1 to v0.52.0 jwb@freebsd.org biology/kallisto/0.51.1/v0.52.0 Thu, 26 Feb 2026 02:56:47 -0000 https://codeload.github.com/https://api.github.com/repos/pachterlab/kallisto/v0.52.0?dummy=/ http://www.freshports.org/biology/kallisto/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fkallisto biology Sun, 1 Mar 2026 02:54:24 -0000 Sun, 1 Mar 2026 02:02:55 -0000 v0.52.0 kallisto 0.51.1 /jwb@freebsd.org.html Update found for port biology/py-macs3: version 3.0.3 to v3.0.4 jwb@freebsd.org biology/py-macs3/3.0.3/v3.0.4 Tue, 24 Feb 2026 03:09:44 -0000 py-macs3 v3.0.4 3.0.3 http://www.freshports.org/biology/py-macs3/ https://codeload.github.com/https://api.github.com/repos/macs3-project/MACS/v3.0.4?dummy=/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-macs3 Sun, 1 Mar 2026 03:01:10 -0000 Sun, 1 Mar 2026 02:02:48 -0000 /jwb@freebsd.org.html Update found for port biology/bowtie2: version 2.5.4 to v2.5.5 jwb@freebsd.org biology/bowtie2/2.5.4/v2.5.5 Wed, 18 Feb 2026 03:07:35 -0000 https://codeload.github.com/https://api.github.com/repos/BenLangmead/bowtie2/v2.5.5?dummy=/ http://www.freshports.org/biology/bowtie2/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbowtie2 biology Sun, 1 Mar 2026 03:02:07 -0000 Sun, 1 Mar 2026 02:02:54 -0000 v2.5.5 bowtie2 2.5.4 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.41.0 jwb@freebsd.org science/csvtk/0.36.0/v0.41.0 Mon, 9 Feb 2026 03:09:46 -0000 csvtk v0.41.0 0.36.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk science https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.41.0?dummy=/ http://www.freshports.org/science/csvtk/ Sun, 1 Mar 2026 02:21:09 -0000 Sun, 1 Mar 2026 03:14:47 -0000 /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.35.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.35.0 Fri, 6 Feb 2026 03:15:06 -0000 net http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.35.0.tar.gz http://www.freshports.org/net/py-google-cloud-pubsub/ Sun, 1 Mar 2026 02:19:49 -0000 Sun, 1 Mar 2026 03:01:50 -0000 2.35.0 py-google-cloud-pubsub 2.32.0 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 0.5.2 py-pydeseq2 0.5.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 biology http://www.freshports.org/biology/py-pydeseq2/ https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz Sun, 1 Mar 2026 02:02:56 -0000 Sun, 1 Mar 2026 02:47:17 -0000 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.3.0 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.3.0/vdb-4760-2.9.7 Thu, 18 Dec 2025 03:45:07 -0000 Sun, 1 Mar 2026 03:27:32 -0000 Sun, 1 Mar 2026 02:02:58 -0000 http://www.freshports.org/biology/sra-tools/ https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools biology 3.3.0 sra-tools vdb-4760-2.9.7 /jwb@freebsd.org.html Update found for port biology/samtools: version 1.22 to 1.23 jwb@freebsd.org biology/samtools/1.22/1.23 Thu, 18 Dec 2025 02:59:10 -0000 Sun, 1 Mar 2026 02:02:57 -0000 Sun, 1 Mar 2026 02:57:27 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsamtools http://www.freshports.org/biology/samtools/ https://codeload.github.com/https://api.github.com/repos/samtools/samtools/1.23?dummy=/ samtools 1.22 1.23 /jwb@freebsd.org.html Update found for port biology/bcftools: version 1.22 to 1.23 jwb@freebsd.org biology/bcftools/1.22/1.23 Wed, 17 Dec 2025 02:54:50 -0000 http://www.freshports.org/biology/bcftools/ https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.23?dummy=/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbcftools Sun, 1 Mar 2026 03:03:11 -0000 Sun, 1 Mar 2026 02:02:52 -0000 bcftools 1.22 1.23 /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.21 to 1.22 jwb@freebsd.org science/orthanc-dicomweb/1.21/1.22 Wed, 3 Dec 2025 02:44:27 -0000 orthanc-dicomweb 1.22 1.21 https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.22.tar.gz http://www.freshports.org/science/orthanc-dicomweb/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb science Sun, 1 Mar 2026 03:12:52 -0000 Sun, 1 Mar 2026 02:20:55 -0000 /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.1.4 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.1.4 Sat, 11 Oct 2025 02:42:38 -0000 https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.1.4?dummy=/ http://www.freshports.org/devel/mongo-cxx-driver/ devel http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver Sun, 1 Mar 2026 02:52:57 -0000 Sun, 1 Mar 2026 02:06:48 -0000 4.0.0 mongo-cxx-driver r4.1.4 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 Sun, 1 Mar 2026 02:02:49 -0000 Sun, 1 Mar 2026 02:42:52 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim http://www.freshports.org/biology/py-pywgsim/ https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz 0.6.0 py-pywgsim 0.5.2 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 v1.3.10 freebayes 1.3.9 Sun, 1 Mar 2026 03:34:12 -0000 Sun, 1 Mar 2026 02:02:55 -0000 http://www.freshports.org/biology/freebayes/ https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes biology /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 Sun, 1 Mar 2026 02:02:50 -0000 Sun, 1 Mar 2026 02:56:38 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha http://www.freshports.org/biology/bio-mocha/ https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ 1.21 bio-mocha 1.20 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.14 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.14 Mon, 19 May 2025 02:38:55 -0000 1.0.13 vcflib v1.0.14 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib biology https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.14?dummy=/ http://www.freshports.org/biology/vcflib/ Sun, 1 Mar 2026 02:02:57 -0000 Sun, 1 Mar 2026 03:33:36 -0000 /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 3.1.5 py-dna-features-viewer 3.1.3 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer http://www.freshports.org/biology/py-dna-features-viewer/ https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz Sun, 1 Mar 2026 02:02:49 -0000 Sun, 1 Mar 2026 02:50:12 -0000 /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 subread 2.1.0 2.1.1 http://www.freshports.org/biology/subread/ https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread Sun, 1 Mar 2026 03:28:53 -0000 Sun, 1 Mar 2026 02:02:48 -0000 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 vnatbiotech mmseqs2 17-b804f Sun, 1 Mar 2026 02:02:52 -0000 Sun, 1 Mar 2026 03:53:38 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 biology http://www.freshports.org/biology/mmseqs2/ https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 2.68 stacks 2.69 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks biology https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz http://www.freshports.org/biology/stacks/ Sun, 1 Mar 2026 02:03:00 -0000 Sun, 1 Mar 2026 03:27:19 -0000 /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 Sun, 1 Mar 2026 02:02:55 -0000 Sun, 1 Mar 2026 03:44:28 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ http://www.freshports.org/biology/ddocent/ ddocent 2.7.8 v2.9.8 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ http://www.freshports.org/biology/bifrost/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost Sun, 1 Mar 2026 02:32:32 -0000 Sun, 1 Mar 2026 02:02:58 -0000 bifrost paper 1.3.5 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 spcm 0.5.8 0.5.9 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm sysutils http://www.freshports.org/sysutils/spcm/ https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ Sun, 1 Mar 2026 02:23:52 -0000 Sun, 1 Mar 2026 02:59:02 -0000 /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 py-deeptools 3.5.3 3.5.2 http://www.freshports.org/biology/py-deeptools/ https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools Sun, 1 Mar 2026 03:56:52 -0000 Sun, 1 Mar 2026 02:02:56 -0000 /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 g20150417 bfc submitted-v1 http://www.freshports.org/biology/bfc/ https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc Sun, 1 Mar 2026 03:18:48 -0000 Sun, 1 Mar 2026 02:02:48 -0000 /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 Sun, 1 Mar 2026 02:07:23 -0000 Sun, 1 Mar 2026 03:06:53 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost devel http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip http://www.freshports.org/devel/lnphost/ 1.0a lnphost 1.0