/ New distfiles found via the portscout scanner Fri, 1 May 2026 06:22:59 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port archivers/streamvbyte: version 2.0.0 to v3.0.0 jwb@freebsd.org archivers/streamvbyte/2.0.0/v3.0.0 Fri, 1 May 2026 04:13:17 -0000 v3.0.0 archivers http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=archivers%2Fstreamvbyte http://www.freshports.org/archivers/streamvbyte/ Fri, 1 May 2026 04:13:17 -0000 https://codeload.github.com/https://api.github.com/repos/fast-pack/streamvbyte/v3.0.0?dummy=/ 2.0.0 Thu, 30 Apr 2026 02:01:14 -0000 streamvbyte /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 497 jwb@freebsd.org biology/ucsc-userapps/474/497 Fri, 1 May 2026 02:54:54 -0000 Thu, 30 Apr 2026 02:03:16 -0000 ucsc-userapps 474 https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v497.src.tgz Fri, 1 May 2026 02:54:54 -0000 http://www.freshports.org/biology/ucsc-userapps/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps biology 497 /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.83 jwb@freebsd.org biology/bbmap/39.34/39.83 Thu, 30 Apr 2026 03:34:54 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap biology 39.83 http://www.freshports.org/biology/bbmap/ Fri, 1 May 2026 03:48:19 -0000 bbmap Thu, 30 Apr 2026 02:03:15 -0000 39.34 https://cfhcable.dl.sourceforge.net/project/bbmap/BBMap_39.83.tar.gz /jwb@freebsd.org.html Update found for port biology/vsearch: version 2.30.6 to v2.31.0 jwb@freebsd.org biology/vsearch/2.30.6/v2.31.0 Thu, 30 Apr 2026 02:45:49 -0000 Fri, 1 May 2026 04:14:38 -0000 2.30.6 Thu, 30 Apr 2026 02:03:19 -0000 vsearch https://codeload.github.com/https://api.github.com/repos/torognes/vsearch/v2.31.0?dummy=/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvsearch v2.31.0 http://www.freshports.org/biology/vsearch/ /jwb@freebsd.org.html Update found for port devel/R-cran-getopt: version 1.20.4 to 1.21.1 jwb@freebsd.org devel/R-cran-getopt/1.20.4/1.21.1 Tue, 28 Apr 2026 03:17:18 -0000 Fri, 1 May 2026 03:07:19 -0000 https://stat.ethz.ch/CRAN/src/contrib/getopt_1.21.1.tar.gz Thu, 30 Apr 2026 02:11:43 -0000 R-cran-getopt 1.20.4 1.21.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2FR-cran-getopt devel http://www.freshports.org/devel/R-cran-getopt/ /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.3.0 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.3.0 Thu, 23 Apr 2026 03:54:22 -0000 devel http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver r4.3.0 http://www.freshports.org/devel/mongo-cxx-driver/ Fri, 1 May 2026 02:57:32 -0000 4.0.0 mongo-cxx-driver Thu, 30 Apr 2026 02:08:29 -0000 https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.3.0?dummy=/ /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 Fri, 1 May 2026 03:57:12 -0000 https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 Thu, 30 Apr 2026 02:04:06 -0000 cutecom 0.60.0 1.00.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom comms http://www.freshports.org/comms/cutecom/ /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.37.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.37.0 Fri, 10 Apr 2026 03:30:12 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub net 2.37.0 http://www.freshports.org/net/py-google-cloud-pubsub/ Fri, 1 May 2026 02:43:25 -0000 Thu, 30 Apr 2026 02:27:19 -0000 py-google-cloud-pubsub 2.32.0 https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.37.0.tar.gz /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.43.0 jwb@freebsd.org science/csvtk/0.36.0/v0.43.0 Thu, 9 Apr 2026 02:38:41 -0000 http://www.freshports.org/science/csvtk/ v0.43.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk science https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.43.0?dummy=/ csvtk Thu, 30 Apr 2026 02:29:00 -0000 0.36.0 Fri, 1 May 2026 03:03:33 -0000 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Fri, 27 Mar 2026 02:40:38 -0000 vdb-4760-2.9.7 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools biology http://www.freshports.org/biology/sra-tools/ Fri, 1 May 2026 02:59:41 -0000 https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ sra-tools Thu, 30 Apr 2026 02:03:27 -0000 3.4.1 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 21 Mar 2026 03:22:09 -0000 http://www.freshports.org/biology/vcflib/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib v1.0.15 1.0.13 vcflib Thu, 30 Apr 2026 02:03:27 -0000 https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.15?dummy=/ Fri, 1 May 2026 03:59:45 -0000 /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v1.11.4 jwb@freebsd.org biology/salmon/1.10.3/v1.11.4 Thu, 12 Mar 2026 03:05:16 -0000 https://codeload.github.com/https://api.github.com/repos/COMBINE-lab/salmon/v1.11.4?dummy=/ salmon Thu, 30 Apr 2026 02:03:14 -0000 1.10.3 Fri, 1 May 2026 03:39:26 -0000 http://www.freshports.org/biology/salmon/ v1.11.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon biology /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 py-pydeseq2 Thu, 30 Apr 2026 02:03:26 -0000 0.5.2 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz Fri, 1 May 2026 02:44:42 -0000 http://www.freshports.org/biology/py-pydeseq2/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 biology 0.5.4 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim 0.6.0 http://www.freshports.org/biology/py-pywgsim/ Fri, 1 May 2026 03:18:23 -0000 0.5.2 py-pywgsim Thu, 30 Apr 2026 02:03:16 -0000 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 Fri, 1 May 2026 03:04:13 -0000 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ Thu, 30 Apr 2026 02:03:24 -0000 freebayes 1.3.9 v1.3.10 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes biology http://www.freshports.org/biology/freebayes/ /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ Thu, 30 Apr 2026 02:03:19 -0000 bio-mocha 1.20 Fri, 1 May 2026 03:04:29 -0000 http://www.freshports.org/biology/bio-mocha/ 1.21 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha biology /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz Thu, 30 Apr 2026 02:03:17 -0000 py-dna-features-viewer 3.1.3 Fri, 1 May 2026 03:05:07 -0000 http://www.freshports.org/biology/py-dna-features-viewer/ 3.1.5 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer biology /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread biology 2.1.1 http://www.freshports.org/biology/subread/ Fri, 1 May 2026 02:54:08 -0000 Thu, 30 Apr 2026 02:03:15 -0000 subread 2.1.0 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 http://www.freshports.org/biology/mmseqs2/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 biology vnatbiotech mmseqs2 Thu, 30 Apr 2026 02:03:20 -0000 17-b804f https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ Fri, 1 May 2026 03:44:21 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 Fri, 1 May 2026 03:19:17 -0000 2.68 Thu, 30 Apr 2026 02:03:30 -0000 stacks https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks 2.69 http://www.freshports.org/biology/stacks/ /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 Fri, 1 May 2026 04:08:35 -0000 Thu, 30 Apr 2026 02:03:24 -0000 ddocent 2.7.8 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent biology v2.9.8 http://www.freshports.org/biology/ddocent/ /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 http://www.freshports.org/biology/bifrost/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost biology paper bifrost Thu, 30 Apr 2026 02:03:27 -0000 1.3.5 https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ Fri, 1 May 2026 03:54:16 -0000 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ spcm Thu, 30 Apr 2026 02:32:34 -0000 0.5.8 Fri, 1 May 2026 02:55:23 -0000 http://www.freshports.org/sysutils/spcm/ 0.5.9 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm sysutils /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 g20150417 Thu, 30 Apr 2026 02:03:15 -0000 bfc https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ Fri, 1 May 2026 02:34:04 -0000 http://www.freshports.org/biology/bfc/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc submitted-v1 /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 1.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost devel http://www.freshports.org/devel/lnphost/ Fri, 1 May 2026 03:59:41 -0000 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip lnphost Thu, 30 Apr 2026 02:09:17 -0000 1.0a