/ New distfiles found via the portscout scanner Sun, 12 Oct 2025 02:48:23 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.1.4 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.1.4 Sat, 11 Oct 2025 02:42:38 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver Sat, 11 Oct 2025 02:08:30 -0000 devel r4.1.4 mongo-cxx-driver https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.1.4?dummy=/ http://www.freshports.org/devel/mongo-cxx-driver/ Sat, 11 Oct 2025 02:42:38 -0000 4.0.0 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.34.0 to v0.37.0 jwb@freebsd.org science/csvtk/0.34.0/v0.37.0 Thu, 9 Oct 2025 02:53:28 -0000 http://www.freshports.org/science/csvtk/ Sat, 11 Oct 2025 02:47:35 -0000 0.34.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk Sat, 11 Oct 2025 02:29:18 -0000 v0.37.0 science csvtk https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.37.0?dummy=/ /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.37 jwb@freebsd.org biology/bbmap/39.34/39.37 Tue, 7 Oct 2025 03:22:58 -0000 http://www.freshports.org/biology/bbmap/ Sat, 11 Oct 2025 02:39:22 -0000 39.34 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap Sat, 11 Oct 2025 02:03:14 -0000 39.37 biology bbmap https://versaweb.dl.sourceforge.net/project/bbmap/BBMap_39.37.tar.gz /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 488 jwb@freebsd.org biology/ucsc-userapps/474/488 Thu, 2 Oct 2025 03:06:25 -0000 474 http://www.freshports.org/biology/ucsc-userapps/ Sun, 12 Oct 2025 02:36:33 -0000 https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v488.src.tgz ucsc-userapps 488 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps Sat, 11 Oct 2025 02:03:15 -0000 /jwb@freebsd.org.html Update found for port biology/samtools: version 1.22 to 1.22.1 jwb@freebsd.org biology/samtools/1.22/1.22.1 Wed, 16 Jul 2025 03:57:57 -0000 Sat, 11 Oct 2025 03:19:47 -0000 http://www.freshports.org/biology/samtools/ 1.22 samtools https://codeload.github.com/https://api.github.com/repos/samtools/samtools/1.22.1?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsamtools Sat, 11 Oct 2025 02:03:25 -0000 biology 1.22.1 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 biology 0.6.0 Sat, 11 Oct 2025 02:03:15 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz py-pywgsim 0.5.2 http://www.freshports.org/biology/py-pywgsim/ Sat, 11 Oct 2025 02:39:28 -0000 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ freebayes v1.3.10 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes Sat, 11 Oct 2025 02:03:23 -0000 1.3.9 http://www.freshports.org/biology/freebayes/ Sat, 11 Oct 2025 02:52:34 -0000 /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 bio-mocha https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha Sat, 11 Oct 2025 02:03:18 -0000 1.21 biology http://www.freshports.org/biology/bio-mocha/ Sat, 11 Oct 2025 03:04:36 -0000 1.20 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.14 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.14 Mon, 19 May 2025 02:38:55 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib Sat, 11 Oct 2025 02:03:26 -0000 v1.0.14 biology vcflib https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.14?dummy=/ http://www.freshports.org/biology/vcflib/ Sat, 11 Oct 2025 03:16:11 -0000 1.0.13 /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz py-dna-features-viewer biology 3.1.5 Sat, 11 Oct 2025 02:03:16 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer 3.1.3 Sat, 11 Oct 2025 03:15:32 -0000 http://www.freshports.org/biology/py-dna-features-viewer/ /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 2.1.0 Sun, 12 Oct 2025 02:47:59 -0000 http://www.freshports.org/biology/subread/ biology 2.1.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread Sat, 11 Oct 2025 02:03:14 -0000 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz subread /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.2.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.2.1/vdb-4760-2.9.7 Sat, 22 Mar 2025 03:03:00 -0000 sra-tools https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ Sat, 11 Oct 2025 02:03:27 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools vdb-4760-2.9.7 biology http://www.freshports.org/biology/sra-tools/ Sat, 11 Oct 2025 02:49:36 -0000 3.2.1 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 mmseqs2 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ Sat, 11 Oct 2025 02:03:19 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 vnatbiotech biology http://www.freshports.org/biology/mmseqs2/ Sat, 11 Oct 2025 03:27:55 -0000 17-b804f /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 Sun, 12 Oct 2025 02:43:34 -0000 http://www.freshports.org/biology/stacks/ 2.68 stacks https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz Sat, 11 Oct 2025 02:03:29 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks 2.69 biology /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ ddocent biology v2.9.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent Sat, 11 Oct 2025 02:03:23 -0000 2.7.8 http://www.freshports.org/biology/ddocent/ Sat, 11 Oct 2025 03:24:44 -0000 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ bifrost biology paper http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost Sat, 11 Oct 2025 02:03:27 -0000 1.3.5 http://www.freshports.org/biology/bifrost/ Sat, 11 Oct 2025 03:34:24 -0000 /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.6.1 to 1.7.4 jwb@freebsd.org devel/py-rich-click/1.6.1/1.7.4 Wed, 13 Mar 2024 03:44:49 -0000 py-rich-click https://pypi.org/packages/source/r/rich-click/rich-click-1.7.4.tar.gz Sat, 11 Oct 2025 02:12:21 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click devel 1.7.4 Sat, 11 Oct 2025 03:35:25 -0000 http://www.freshports.org/devel/py-rich-click/ 1.6.1 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 Sat, 11 Oct 2025 03:45:09 -0000 http://www.freshports.org/sysutils/spcm/ 0.5.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm Sat, 11 Oct 2025 02:32:56 -0000 0.5.9 sysutils spcm https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 3.5.2 http://www.freshports.org/biology/py-deeptools/ Sat, 11 Oct 2025 03:46:38 -0000 3.5.3 biology Sat, 11 Oct 2025 02:03:25 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz py-deeptools /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 Sat, 11 Oct 2025 03:46:14 -0000 http://www.freshports.org/biology/bfc/ g20150417 bfc https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc Sat, 11 Oct 2025 02:03:14 -0000 submitted-v1 biology /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 1.0a Sat, 11 Oct 2025 02:53:29 -0000 http://www.freshports.org/devel/lnphost/ http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip lnphost 1.0 devel Sat, 11 Oct 2025 02:09:18 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost