/ New distfiles found via the portscout scanner Thu, 24 Sep 2026 09:45:02 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port science/orthanc-postgresql: version 10.3 to 11.0 jwb@freebsd.org science/orthanc-postgresql/10.3/11.0 Sun, 20 Sep 2026 03:20:20 -0000 11.0 http://www.freshports.org/science/orthanc-postgresql/ https://orthanc.uclouvain.be/downloads/sources/orthanc-postgresql/OrthancPostgreSQL-11.0.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-postgresql orthanc-postgresql Wed, 23 Sep 2026 02:35:54 -0000 Thu, 24 Sep 2026 04:07:51 -0000 science 10.3 /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.5.3 to r4.6.0 jwb@freebsd.org devel/mongo-cxx-driver/4.5.3/r4.6.0 Thu, 17 Sep 2026 04:17:07 -0000 r4.6.0 http://www.freshports.org/devel/mongo-cxx-driver/ https://api.github.com/repos/mongodb/mongo-cxx-driver/tarball/r4.6.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver mongo-cxx-driver Wed, 23 Sep 2026 02:09:28 -0000 Thu, 24 Sep 2026 03:26:17 -0000 devel 4.5.3 /jwb@freebsd.org.html Update found for port www/py-choreographer: version 1.3.0 to 1.4.0 jwb@freebsd.org www/py-choreographer/1.3.0/1.4.0 Thu, 17 Sep 2026 03:01:15 -0000 Thu, 24 Sep 2026 04:18:43 -0000 Wed, 23 Sep 2026 02:42:35 -0000 py-choreographer 1.3.0 www http://www.freshports.org/www/py-choreographer/ 1.4.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=www%2Fpy-choreographer https://pypi.org/packages/source/c/choreographer/choreographer-1.4.0.tar.gz /jwb@freebsd.org.html Update found for port science/csvtk: version 0.37.0 to v0.48.0 jwb@freebsd.org science/csvtk/0.37.0/v0.48.0 Wed, 9 Sep 2026 03:34:34 -0000 Wed, 23 Sep 2026 02:35:31 -0000 Thu, 24 Sep 2026 04:07:37 -0000 csvtk science 0.37.0 http://www.freshports.org/science/csvtk/ v0.48.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk https://api.github.com/repos/golang/sys/tarball/refs/tags/v0.48.0 /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.6 to 4.0.0 jwb@freebsd.org biology/py-deeptools/3.5.6/4.0.0 Sun, 6 Sep 2026 03:26:18 -0000 http://www.freshports.org/biology/py-deeptools/ 4.0.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools https://pypi.org/packages/source/d/deeptools/deeptools-4.0.0.tar.gz Wed, 23 Sep 2026 02:03:46 -0000 Thu, 24 Sep 2026 02:51:02 -0000 py-deeptools biology 3.5.6 /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v2.7.0 jwb@freebsd.org biology/salmon/1.10.3/v2.7.0 Mon, 31 Aug 2026 03:51:05 -0000 http://www.freshports.org/biology/salmon/ v2.7.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon https://api.github.com/repos/COMBINE-lab/salmon/tarball/v2.7.0 Thu, 24 Sep 2026 02:51:37 -0000 Wed, 23 Sep 2026 02:03:34 -0000 salmon 1.10.3 biology /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.9 to paper jwb@freebsd.org biology/bifrost/1.3.9/paper Wed, 12 Aug 2026 04:01:36 -0000 http://www.freshports.org/biology/bifrost/ paper http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost https://api.github.com/repos/pmelsted/bifrost/tarball/paper Thu, 24 Sep 2026 04:39:02 -0000 Wed, 23 Sep 2026 02:03:48 -0000 bifrost 1.3.9 biology /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sat, 20 Jun 2026 19:25:28 -0000 vnatbiotech http://www.freshports.org/biology/mmseqs2/ https://api.github.com/repos/soedinglab/MMseqs2/tarball/vNatBiotech http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 mmseqs2 Wed, 23 Sep 2026 02:03:41 -0000 Thu, 24 Sep 2026 04:21:23 -0000 biology 17-b804f /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Sat, 20 Jun 2026 18:46:14 -0000 biology g20150417 Wed, 23 Sep 2026 02:03:35 -0000 Thu, 24 Sep 2026 04:09:31 -0000 bfc http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc https://api.github.com/repos/lh3/bfc/tarball/refs/tags/submitted-v1 http://www.freshports.org/biology/bfc/ submitted-v1 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 20 Jun 2026 18:45:48 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib https://api.github.com/repos/vcflib/vcflib/tarball/v1.0.15 http://www.freshports.org/biology/vcflib/ v1.0.15 1.0.13 biology Thu, 24 Sep 2026 04:06:10 -0000 Wed, 23 Sep 2026 02:03:47 -0000 vcflib /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Sat, 20 Jun 2026 18:12:59 -0000 3.4.1 biology Thu, 24 Sep 2026 03:21:11 -0000 Wed, 23 Sep 2026 02:03:48 -0000 sra-tools http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools https://api.github.com/repos/ncbi/sra-tools/tarball/refs/tags/VDB-4760-2.9.7 http://www.freshports.org/biology/sra-tools/ vdb-4760-2.9.7 /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 cutecom Thu, 24 Sep 2026 03:10:21 -0000 Wed, 23 Sep 2026 02:04:31 -0000 0.60.0 comms 1.00.0 http://www.freshports.org/comms/cutecom/ https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz http://www.freshports.org/biology/stacks/ 2.69 2.68 biology Thu, 24 Sep 2026 03:18:25 -0000 Wed, 23 Sep 2026 02:03:51 -0000 stacks