/ New distfiles found via the portscout scanner Thu, 21 Nov 2024 08:40:17 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/py-multiqc: version 1.25.1 to 1.25.2 jwb@freebsd.org biology/py-multiqc/1.25.1/1.25.2 Thu, 21 Nov 2024 02:40:16 -0000 Thu, 21 Nov 2024 02:40:16 -0000 biology Thu, 21 Nov 2024 02:03:17 -0000 py-multiqc http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-multiqc https://pypi.org/packages/source/m/multiqc/multiqc-1.25.2.tar.gz 1.25.1 http://www.freshports.org/biology/py-multiqc/ 1.25.2 /jwb@freebsd.org.html Update found for port biology/bbmap: version 38.92 to 39.13 jwb@freebsd.org biology/bbmap/38.92/39.13 Tue, 19 Nov 2024 02:54:26 -0000 bbmap biology Thu, 21 Nov 2024 02:03:14 -0000 Thu, 21 Nov 2024 03:51:26 -0000 39.13 http://www.freshports.org/biology/bbmap/ 38.92 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap https://versaweb.dl.sourceforge.net/project/bbmap/BBMap_39.13.tar.gz /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.1.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.1.1/vdb-4760-2.9.7 Tue, 19 Nov 2024 02:52:14 -0000 Thu, 21 Nov 2024 03:27:35 -0000 Thu, 21 Nov 2024 02:03:26 -0000 biology sra-tools https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools 3.1.1 http://www.freshports.org/biology/sra-tools/ vdb-4760-2.9.7 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 472 to 473 jwb@freebsd.org biology/ucsc-userapps/472/473 Fri, 8 Nov 2024 03:49:12 -0000 472 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps http://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v473.src.tgz 473 http://www.freshports.org/biology/ucsc-userapps/ Thu, 21 Nov 2024 03:01:00 -0000 ucsc-userapps biology Thu, 21 Nov 2024 02:03:15 -0000 /jwb@freebsd.org.html Update found for port biology/subread: version 2.0.2 to 2.0.8 jwb@freebsd.org biology/subread/2.0.2/2.0.8 Mon, 4 Nov 2024 03:26:42 -0000 biology Thu, 21 Nov 2024 02:03:13 -0000 subread Thu, 21 Nov 2024 02:48:48 -0000 http://www.freshports.org/biology/subread/ 2.0.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread https://onboardcloud.dl.sourceforge.net/project/subread/subread-2.0.8/subread-2.0.8-source.tar.gz 2.0.2 /jwb@freebsd.org.html Update found for port biology/ncbi-blast+: version 2.14.1 to 2.16.0 jwb@freebsd.org biology/ncbi-blast+/2.14.1/2.16.0 Thu, 18 Jul 2024 03:33:30 -0000 2.14.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fncbi-blast+ https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.16.0+-src.tar.gz 2.16.0 http://www.freshports.org/biology/ncbi-blast+/ Thu, 21 Nov 2024 03:45:50 -0000 ncbi-blast+ biology Thu, 21 Nov 2024 02:03:18 -0000 /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 biology Thu, 21 Nov 2024 02:03:23 -0000 ddocent Thu, 21 Nov 2024 02:45:41 -0000 http://www.freshports.org/biology/ddocent/ v2.9.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ 2.7.8 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.6 to v1.3.8 jwb@freebsd.org biology/freebayes/1.3.6/v1.3.8 Wed, 24 Apr 2024 03:03:22 -0000 freebayes Thu, 21 Nov 2024 02:03:22 -0000 biology Thu, 21 Nov 2024 03:05:03 -0000 v1.3.8 http://www.freshports.org/biology/freebayes/ 1.3.6 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.8?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes /jwb@freebsd.org.html Update found for port devel/R-cran-optparse: version 1.6.6 to 1.7.5 jwb@freebsd.org devel/R-cran-optparse/1.6.6/1.7.5 Wed, 17 Apr 2024 03:40:41 -0000 1.7.5 http://www.freshports.org/devel/R-cran-optparse/ 1.6.6 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2FR-cran-optparse https://cran.csiro.au/src/contrib/optparse_1.7.5.tar.gz R-cran-optparse devel Thu, 21 Nov 2024 02:08:28 -0000 Thu, 21 Nov 2024 03:32:35 -0000 /jwb@freebsd.org.html Update found for port biology/bwa: version 0.7.17 to v0.7.18 jwb@freebsd.org biology/bwa/0.7.17/v0.7.18 Mon, 15 Apr 2024 02:56:09 -0000 bwa Thu, 21 Nov 2024 02:03:21 -0000 biology Thu, 21 Nov 2024 03:33:23 -0000 v0.7.18 http://www.freshports.org/biology/bwa/ 0.7.17 https://codeload.github.com/https://api.github.com/repos/lh3/bwa/v0.7.18?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbwa /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 Thu, 21 Nov 2024 02:03:26 -0000 biology bifrost Thu, 21 Nov 2024 03:47:41 -0000 http://www.freshports.org/biology/bifrost/ paper https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost 1.3.5 /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.6.1 to 1.7.4 jwb@freebsd.org devel/py-rich-click/1.6.1/1.7.4 Wed, 13 Mar 2024 03:44:49 -0000 1.6.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click https://pypi.org/packages/source/r/rich-click/rich-click-1.7.4.tar.gz 1.7.4 http://www.freshports.org/devel/py-rich-click/ Thu, 21 Nov 2024 03:40:08 -0000 py-rich-click devel Thu, 21 Nov 2024 02:11:59 -0000 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 Thu, 21 Nov 2024 03:20:28 -0000 sysutils Thu, 21 Nov 2024 02:31:37 -0000 spcm http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ 0.5.8 http://www.freshports.org/sysutils/spcm/ 0.5.9 /jwb@freebsd.org.html Update found for port biology/py-bcbio-gff: version 0.7.0 to 0.7.1 jwb@freebsd.org biology/py-bcbio-gff/0.7.0/0.7.1 Tue, 30 Jan 2024 03:09:57 -0000 0.7.1 http://www.freshports.org/biology/py-bcbio-gff/ 0.7.0 https://pypi.org/packages/source/b/bcbio-gff/bcbio-gff-0.7.1.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-bcbio-gff py-bcbio-gff Thu, 21 Nov 2024 02:03:14 -0000 biology Thu, 21 Nov 2024 03:49:02 -0000 /jwb@freebsd.org.html Update found for port biology/py-crossmap: version 0.5.4 to 0.7.0 jwb@freebsd.org biology/py-crossmap/0.5.4/0.7.0 Fri, 12 Jan 2024 03:07:54 -0000 0.5.4 https://pypi.org/packages/source/C/CrossMap/CrossMap-0.7.0.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-crossmap 0.7.0 http://www.freshports.org/biology/py-crossmap/ Thu, 21 Nov 2024 03:32:27 -0000 py-crossmap Thu, 21 Nov 2024 02:03:23 -0000 biology /jwb@freebsd.org.html Update found for port biology/py-htseq: version 2.0.4 to 2.0.5 jwb@freebsd.org biology/py-htseq/2.0.4/2.0.5 Thu, 14 Dec 2023 03:57:48 -0000 https://pypi.org/packages/source/H/HTSeq/HTSeq-2.0.5.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-htseq 2.0.4 http://www.freshports.org/biology/py-htseq/ 2.0.5 Thu, 21 Nov 2024 03:03:26 -0000 Thu, 21 Nov 2024 02:03:21 -0000 biology py-htseq /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 Thu, 21 Nov 2024 03:38:18 -0000 biology Thu, 21 Nov 2024 02:03:24 -0000 py-deeptools http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz 3.5.2 http://www.freshports.org/biology/py-deeptools/ 3.5.3 /jwb@freebsd.org.html Update found for port biology/py-bigwig: version 0.3.18 to 0.3.22 jwb@freebsd.org biology/py-bigwig/0.3.18/0.3.22 Sat, 8 Apr 2023 09:12:20 -0000 py-bigwig Wed, 13 Oct 2021 02:11:21 -0000 biology Thu, 21 Nov 2024 03:12:43 -0000 0.3.22 http://www.freshports.org/biology/py-bigwig/ 0.3.18 https://pypi.org/packages/source/p/pyBigWig/pyBigWig-0.3.22.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-bigwig /jwb@freebsd.org.html Update found for port biology/tabixpp: version 1.0.0-10 to v1.1.2 jwb@freebsd.org biology/tabixpp/1.0.0-10/v1.1.2 Thu, 19 Jan 2023 15:11:21 -0000 v1.1.2 http://www.freshports.org/biology/tabixpp/ 1.0.0-10 https://codeload.github.com/https://api.github.com/repos/vcflib/tabixpp/v1.1.2?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ftabixpp tabixpp Thu, 21 Nov 2024 02:03:15 -0000 biology Thu, 21 Nov 2024 03:37:52 -0000 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 13-45111 to vnatbiotech jwb@freebsd.org biology/mmseqs2/13-45111/vnatbiotech Tue, 5 Apr 2022 08:20:08 -0000 Thu, 21 Nov 2024 03:04:25 -0000 mmseqs2 Thu, 21 Nov 2024 02:03:19 -0000 biology 13-45111 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 vnatbiotech http://www.freshports.org/biology/mmseqs2/ /jwb@freebsd.org.html Update found for port biology/gemma: version 0.98.3 to v0.98.5 jwb@freebsd.org biology/gemma/0.98.3/v0.98.5 Thu, 26 Aug 2021 04:04:38 -0000 https://codeload.github.com/https://api.github.com/repos/genetics-statistics/GEMMA/v0.98.5?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fgemma 0.98.3 http://www.freshports.org/biology/gemma/ v0.98.5 Thu, 21 Nov 2024 03:01:57 -0000 Thu, 21 Nov 2024 02:03:29 -0000 biology gemma /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 submitted-v1 http://www.freshports.org/biology/bfc/ g20150417 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ bfc biology Thu, 21 Nov 2024 02:03:14 -0000 Thu, 21 Nov 2024 02:38:19 -0000 /jwb@freebsd.org.html Update found for port science/packmol: version 18.169 to 20.010 jwb@freebsd.org science/packmol/18.169/20.010 Sat, 11 Jan 2020 04:25:23 -0000 http://www.freshports.org/science/packmol/ 20.010 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fpackmol https://codeload.github.com/https://api.github.com/repos/mcubeg/packmol/20.010?dummy=/ 18.169 science Thu, 21 Nov 2024 02:25:48 -0000 packmol Thu, 21 Nov 2024 03:02:07 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.4 to 2.5 jwb@freebsd.org biology/stacks/2.4/2.5 Tue, 17 Dec 2019 02:49:18 -0000 http://www.freshports.org/biology/stacks/ 2.5 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks http://catchenlab.life.illinois.edu/stacks/source/stacks-2.5.tar.gz 2.4 biology Thu, 21 Nov 2024 02:03:29 -0000 stacks Thu, 21 Nov 2024 03:46:54 -0000 /jwb@freebsd.org.html Update found for port biology/fasttree: version 2.1.10 to 2.1.11 jwb@freebsd.org biology/fasttree/2.1.10/2.1.11 Sat, 18 May 2019 04:35:38 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffasttree http://www.microbesonline.org/fasttree/FastTree-2.1.11.c 2.1.10 http://www.freshports.org/biology/fasttree/ 2.1.11 Thu, 21 Nov 2024 02:54:56 -0000 biology Thu, 21 Nov 2024 02:03:14 -0000 fasttree /jwb@freebsd.org.html Update found for port www/webbrowser: version 0.3 to 0.4 jwb@freebsd.org www/webbrowser/0.3/0.4 Wed, 10 Feb 2016 08:46:38 -0000 0.4 http://www.freshports.org/www/webbrowser/ 0.3 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=www%2Fwebbrowser http://acadix.biz/Ports/distfiles/webbrowser-0.4.tar.xz webbrowser www Thu, 21 Nov 2024 02:33:41 -0000 Thu, 21 Nov 2024 03:27:15 -0000 /jwb@freebsd.org.html Update found for port devel/roboctl: version 0.3.8 to 0.3.9 jwb@freebsd.org devel/roboctl/0.3.8/0.3.9 Wed, 28 Oct 2015 05:07:41 -0000 0.3.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Froboctl http://acadix.biz/Ports/distfiles/roboctl-0.3.9.tar.xz 0.3.9 http://www.freshports.org/devel/roboctl/ Thu, 21 Nov 2024 02:56:32 -0000 roboctl devel Thu, 21 Nov 2024 02:10:32 -0000 /jwb@freebsd.org.html Update found for port sysutils/endian: version 1.1 to 1.2 jwb@freebsd.org sysutils/endian/1.1/1.2 Sat, 6 Jun 2015 06:52:26 -0000 endian sysutils Thu, 21 Nov 2024 02:31:08 -0000 Thu, 21 Nov 2024 03:39:38 -0000 1.2 http://www.freshports.org/sysutils/endian/ 1.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fendian http://personalpages.tds.net/~jwbacon/Ports/distfiles/endian-1.2.tar.xz /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 Thu, 21 Nov 2024 02:45:50 -0000 Thu, 21 Nov 2024 02:09:05 -0000 devel lnphost http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost 1.0a http://www.freshports.org/devel/lnphost/ 1.0 /jwb@freebsd.org.html Update found for port devel/libgamepad: version 0.1.2 to 0.1.3 jwb@freebsd.org devel/libgamepad/0.1.2/0.1.3 Mon, 2 Jun 2014 06:12:53 -0000 0.1.3 http://www.freshports.org/devel/libgamepad/ 0.1.2 http://acadix.biz/Ports/distfiles/libgamepad-0.1.3.tar.xz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flibgamepad libgamepad Thu, 21 Nov 2024 02:11:42 -0000 devel Thu, 21 Nov 2024 03:18:00 -0000