/ New distfiles found via the portscout scanner Tue, 24 Feb 2026 15:59:54 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/py-macs3: version 3.0.3 to v3.0.4 jwb@freebsd.org biology/py-macs3/3.0.3/v3.0.4 Tue, 24 Feb 2026 03:09:44 -0000 3.0.3 biology v3.0.4 http://www.freshports.org/biology/py-macs3/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-macs3 Tue, 24 Feb 2026 02:02:49 -0000 Tue, 24 Feb 2026 03:09:44 -0000 https://codeload.github.com/https://api.github.com/repos/macs3-project/MACS/v3.0.4?dummy=/ py-macs3 /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.76 jwb@freebsd.org biology/bbmap/39.34/39.76 Sat, 21 Feb 2026 03:57:02 -0000 39.34 39.76 biology http://www.freshports.org/biology/bbmap/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap Tue, 24 Feb 2026 03:32:13 -0000 https://sinalbr.dl.sourceforge.net/project/bbmap/BBMap_39.76.tar.gz Tue, 24 Feb 2026 02:02:49 -0000 bbmap /jwb@freebsd.org.html Update found for port biology/bowtie2: version 2.5.4 to v2.5.5 jwb@freebsd.org biology/bowtie2/2.5.4/v2.5.5 Wed, 18 Feb 2026 03:07:35 -0000 http://www.freshports.org/biology/bowtie2/ biology v2.5.5 2.5.4 bowtie2 Tue, 24 Feb 2026 02:02:56 -0000 Tue, 24 Feb 2026 02:53:32 -0000 https://codeload.github.com/https://api.github.com/repos/BenLangmead/bowtie2/v2.5.5?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbowtie2 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.41.0 jwb@freebsd.org science/csvtk/0.36.0/v0.41.0 Mon, 9 Feb 2026 03:09:46 -0000 http://www.freshports.org/science/csvtk/ science v0.41.0 0.36.0 csvtk Tue, 24 Feb 2026 03:03:20 -0000 https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.41.0?dummy=/ Tue, 24 Feb 2026 02:21:23 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.35.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.35.0 Fri, 6 Feb 2026 03:15:06 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub Tue, 24 Feb 2026 02:20:03 -0000 Tue, 24 Feb 2026 02:31:16 -0000 https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.35.0.tar.gz py-google-cloud-pubsub 2.32.0 2.35.0 net http://www.freshports.org/net/py-google-cloud-pubsub/ /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 493 jwb@freebsd.org biology/ucsc-userapps/474/493 Thu, 5 Feb 2026 02:56:23 -0000 ucsc-userapps https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v493.src.tgz Tue, 24 Feb 2026 02:31:49 -0000 Tue, 24 Feb 2026 02:02:50 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps http://www.freshports.org/biology/ucsc-userapps/ 493 biology 474 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 Tue, 24 Feb 2026 03:34:21 -0000 Tue, 24 Feb 2026 02:02:58 -0000 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz py-pydeseq2 0.5.2 0.5.4 biology http://www.freshports.org/biology/py-pydeseq2/ /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.3.0 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.3.0/vdb-4760-2.9.7 Thu, 18 Dec 2025 03:45:07 -0000 3.3.0 vdb-4760-2.9.7 biology http://www.freshports.org/biology/sra-tools/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ Tue, 24 Feb 2026 03:25:24 -0000 Tue, 24 Feb 2026 02:02:59 -0000 sra-tools /jwb@freebsd.org.html Update found for port biology/samtools: version 1.22 to 1.23 jwb@freebsd.org biology/samtools/1.22/1.23 Thu, 18 Dec 2025 02:59:10 -0000 samtools Tue, 24 Feb 2026 03:52:16 -0000 Tue, 24 Feb 2026 02:02:58 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/samtools/1.23?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsamtools http://www.freshports.org/biology/samtools/ biology 1.23 1.22 /jwb@freebsd.org.html Update found for port biology/bcftools: version 1.22 to 1.23 jwb@freebsd.org biology/bcftools/1.22/1.23 Wed, 17 Dec 2025 02:54:50 -0000 1.22 biology 1.23 http://www.freshports.org/biology/bcftools/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbcftools Tue, 24 Feb 2026 03:00:33 -0000 Tue, 24 Feb 2026 02:02:53 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.23?dummy=/ bcftools /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.21 to 1.22 jwb@freebsd.org science/orthanc-dicomweb/1.21/1.22 Wed, 3 Dec 2025 02:44:27 -0000 http://www.freshports.org/science/orthanc-dicomweb/ 1.22 science 1.21 orthanc-dicomweb Tue, 24 Feb 2026 02:21:09 -0000 Tue, 24 Feb 2026 02:52:55 -0000 https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.22.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.1.4 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.1.4 Sat, 11 Oct 2025 02:42:38 -0000 4.0.0 r4.1.4 devel http://www.freshports.org/devel/mongo-cxx-driver/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver Tue, 24 Feb 2026 03:12:46 -0000 Tue, 24 Feb 2026 02:06:52 -0000 https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.1.4?dummy=/ mongo-cxx-driver /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 http://www.freshports.org/biology/py-pywgsim/ 0.5.2 biology 0.6.0 Tue, 24 Feb 2026 03:03:05 -0000 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz Tue, 24 Feb 2026 02:02:50 -0000 py-pywgsim http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 http://www.freshports.org/biology/freebayes/ 1.3.9 biology v1.3.10 Tue, 24 Feb 2026 03:38:07 -0000 Tue, 24 Feb 2026 02:02:56 -0000 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ freebayes http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 1.20 1.21 biology http://www.freshports.org/biology/bio-mocha/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha Tue, 24 Feb 2026 02:02:52 -0000 Tue, 24 Feb 2026 03:41:58 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ bio-mocha /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.14 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.14 Mon, 19 May 2025 02:38:55 -0000 http://www.freshports.org/biology/vcflib/ 1.0.13 biology v1.0.14 Tue, 24 Feb 2026 02:02:58 -0000 Tue, 24 Feb 2026 03:47:39 -0000 https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.14?dummy=/ vcflib http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 3.1.5 biology 3.1.3 http://www.freshports.org/biology/py-dna-features-viewer/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer py-dna-features-viewer Tue, 24 Feb 2026 03:32:16 -0000 Tue, 24 Feb 2026 02:02:51 -0000 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 http://www.freshports.org/biology/subread/ 2.1.0 2.1.1 biology Tue, 24 Feb 2026 03:46:59 -0000 Tue, 24 Feb 2026 02:02:49 -0000 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz subread http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 vnatbiotech biology 17-b804f http://www.freshports.org/biology/mmseqs2/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 mmseqs2 Tue, 24 Feb 2026 03:43:36 -0000 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ Tue, 24 Feb 2026 02:02:53 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 Tue, 24 Feb 2026 03:51:52 -0000 Tue, 24 Feb 2026 02:03:01 -0000 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz stacks http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks http://www.freshports.org/biology/stacks/ 2.68 biology 2.69 /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 v2.9.8 biology 2.7.8 http://www.freshports.org/biology/ddocent/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent ddocent Tue, 24 Feb 2026 03:59:09 -0000 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ Tue, 24 Feb 2026 02:02:56 -0000 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 bifrost https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ Tue, 24 Feb 2026 03:08:33 -0000 Tue, 24 Feb 2026 02:02:59 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost http://www.freshports.org/biology/bifrost/ biology paper 1.3.5 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm spcm Tue, 24 Feb 2026 02:24:08 -0000 Tue, 24 Feb 2026 02:57:21 -0000 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ 0.5.9 sysutils 0.5.8 http://www.freshports.org/sysutils/spcm/ /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools py-deeptools Tue, 24 Feb 2026 02:56:11 -0000 https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz Tue, 24 Feb 2026 02:02:57 -0000 biology 3.5.3 3.5.2 http://www.freshports.org/biology/py-deeptools/ /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 g20150417 biology submitted-v1 http://www.freshports.org/biology/bfc/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ Tue, 24 Feb 2026 03:36:56 -0000 Tue, 24 Feb 2026 02:02:49 -0000 bfc /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 Tue, 24 Feb 2026 03:01:48 -0000 Tue, 24 Feb 2026 02:07:27 -0000 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip lnphost http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost http://www.freshports.org/devel/lnphost/ 1.0a devel 1.0