/ New distfiles found via the portscout scanner Sat, 14 Mar 2026 22:55:03 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.36.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.36.0 Fri, 13 Mar 2026 04:08:34 -0000 Sat, 14 Mar 2026 02:27:00 -0000 net 2.32.0 Sat, 14 Mar 2026 03:06:30 -0000 https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.36.0.tar.gz py-google-cloud-pubsub http://www.freshports.org/net/py-google-cloud-pubsub/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub 2.36.0 /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v1.11.4 jwb@freebsd.org biology/salmon/1.10.3/v1.11.4 Thu, 12 Mar 2026 03:05:16 -0000 v1.11.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon Sat, 14 Mar 2026 04:03:41 -0000 biology 1.10.3 Sat, 14 Mar 2026 02:03:11 -0000 http://www.freshports.org/biology/salmon/ salmon https://codeload.github.com/https://api.github.com/repos/COMBINE-lab/salmon/v1.11.4?dummy=/ /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.80 jwb@freebsd.org biology/bbmap/39.34/39.80 Wed, 11 Mar 2026 03:38:37 -0000 Sat, 14 Mar 2026 02:39:45 -0000 biology 39.34 Sat, 14 Mar 2026 02:03:12 -0000 http://www.freshports.org/biology/bbmap/ https://cfhcable.dl.sourceforge.net/project/bbmap/BBMap_39.80.tar.gz bbmap http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap 39.80 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.42.0 jwb@freebsd.org science/csvtk/0.36.0/v0.42.0 Mon, 9 Mar 2026 03:17:37 -0000 Sat, 14 Mar 2026 03:53:33 -0000 Sat, 14 Mar 2026 02:28:40 -0000 science 0.36.0 http://www.freshports.org/science/csvtk/ csvtk https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.42.0?dummy=/ v0.42.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 494 jwb@freebsd.org biology/ucsc-userapps/474/494 Sat, 28 Feb 2026 03:11:10 -0000 biology 474 Sat, 14 Mar 2026 02:03:12 -0000 Sat, 14 Mar 2026 02:53:10 -0000 ucsc-userapps https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v494.src.tgz http://www.freshports.org/biology/ucsc-userapps/ 494 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 0.5.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 Sat, 14 Mar 2026 04:02:31 -0000 Sat, 14 Mar 2026 02:03:22 -0000 biology 0.5.2 http://www.freshports.org/biology/py-pydeseq2/ py-pydeseq2 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.3.0 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.3.0/vdb-4760-2.9.7 Thu, 18 Dec 2025 03:45:07 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools vdb-4760-2.9.7 https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ sra-tools http://www.freshports.org/biology/sra-tools/ Sat, 14 Mar 2026 02:03:23 -0000 biology 3.3.0 Sat, 14 Mar 2026 03:08:45 -0000 /jwb@freebsd.org.html Update found for port biology/samtools: version 1.22 to 1.23 jwb@freebsd.org biology/samtools/1.22/1.23 Thu, 18 Dec 2025 02:59:10 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsamtools 1.23 samtools https://codeload.github.com/https://api.github.com/repos/samtools/samtools/1.23?dummy=/ http://www.freshports.org/biology/samtools/ Sat, 14 Mar 2026 02:03:22 -0000 biology 1.22 Sat, 14 Mar 2026 03:09:14 -0000 /jwb@freebsd.org.html Update found for port biology/bcftools: version 1.22 to 1.23 jwb@freebsd.org biology/bcftools/1.22/1.23 Wed, 17 Dec 2025 02:54:50 -0000 Sat, 14 Mar 2026 02:58:16 -0000 biology Sat, 14 Mar 2026 02:03:17 -0000 1.22 http://www.freshports.org/biology/bcftools/ https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.23?dummy=/ bcftools 1.23 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbcftools /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.21 to 1.22 jwb@freebsd.org science/orthanc-dicomweb/1.21/1.22 Wed, 3 Dec 2025 02:44:27 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb 1.22 Sat, 14 Mar 2026 03:07:40 -0000 science Sat, 14 Mar 2026 02:28:24 -0000 1.21 http://www.freshports.org/science/orthanc-dicomweb/ orthanc-dicomweb https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.22.tar.gz /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.1.4 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.1.4 Sat, 11 Oct 2025 02:42:38 -0000 r4.1.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.1.4?dummy=/ mongo-cxx-driver http://www.freshports.org/devel/mongo-cxx-driver/ devel Sat, 14 Mar 2026 02:08:22 -0000 4.0.0 Sat, 14 Mar 2026 03:34:08 -0000 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim 0.6.0 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz py-pywgsim http://www.freshports.org/biology/py-pywgsim/ 0.5.2 biology Sat, 14 Mar 2026 02:03:13 -0000 Sat, 14 Mar 2026 03:36:20 -0000 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 Sat, 14 Mar 2026 03:46:01 -0000 Sat, 14 Mar 2026 02:03:20 -0000 biology 1.3.9 http://www.freshports.org/biology/freebayes/ freebayes https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes v1.3.10 /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 Sat, 14 Mar 2026 03:18:25 -0000 1.20 biology Sat, 14 Mar 2026 02:03:15 -0000 http://www.freshports.org/biology/bio-mocha/ https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ bio-mocha 1.21 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.14 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.14 Mon, 19 May 2025 02:38:55 -0000 Sat, 14 Mar 2026 02:03:23 -0000 biology 1.0.13 Sat, 14 Mar 2026 02:54:33 -0000 https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.14?dummy=/ vcflib http://www.freshports.org/biology/vcflib/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib v1.0.14 /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 3.1.5 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer http://www.freshports.org/biology/py-dna-features-viewer/ https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz py-dna-features-viewer Sat, 14 Mar 2026 03:09:30 -0000 3.1.3 biology Sat, 14 Mar 2026 02:03:14 -0000 /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 http://www.freshports.org/biology/subread/ subread https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz Sat, 14 Mar 2026 03:03:05 -0000 Sat, 14 Mar 2026 02:03:11 -0000 biology 2.1.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread 2.1.1 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 vnatbiotech Sat, 14 Mar 2026 03:51:54 -0000 biology Sat, 14 Mar 2026 02:03:16 -0000 17-b804f http://www.freshports.org/biology/mmseqs2/ mmseqs2 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 Sat, 14 Mar 2026 03:02:52 -0000 Sat, 14 Mar 2026 02:03:26 -0000 biology 2.68 http://www.freshports.org/biology/stacks/ https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz stacks http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks 2.69 /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent v2.9.8 http://www.freshports.org/biology/ddocent/ ddocent https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ Sat, 14 Mar 2026 02:47:20 -0000 biology Sat, 14 Mar 2026 02:03:20 -0000 2.7.8 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 paper http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost Sat, 14 Mar 2026 03:18:24 -0000 Sat, 14 Mar 2026 02:03:23 -0000 biology 1.3.5 http://www.freshports.org/biology/bifrost/ https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ bifrost /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm 0.5.9 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ spcm http://www.freshports.org/sysutils/spcm/ sysutils Sat, 14 Mar 2026 02:32:14 -0000 0.5.8 Sat, 14 Mar 2026 03:32:30 -0000 /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools 3.5.3 Sat, 14 Mar 2026 02:03:22 -0000 biology 3.5.2 Sat, 14 Mar 2026 03:42:19 -0000 py-deeptools https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz http://www.freshports.org/biology/py-deeptools/ /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 submitted-v1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc http://www.freshports.org/biology/bfc/ bfc https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ Sat, 14 Mar 2026 03:53:28 -0000 biology g20150417 Sat, 14 Mar 2026 02:03:11 -0000 /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 1.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip lnphost http://www.freshports.org/devel/lnphost/ devel 1.0a Sat, 14 Mar 2026 02:09:10 -0000 Sat, 14 Mar 2026 03:48:56 -0000