/ New distfiles found via the portscout scanner Fri, 31 Jul 2026 16:23:15 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/py-crossmap: version 0.7.3 to 0.7.4 jwb@freebsd.org biology/py-crossmap/0.7.3/0.7.4 Fri, 31 Jul 2026 03:52:22 -0000 biology 0.7.4 http://www.freshports.org/biology/py-crossmap/ https://pypi.org/packages/source/c/crossmap/crossmap-0.7.4.tar.gz 0.7.3 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-crossmap Fri, 31 Jul 2026 02:03:45 -0000 py-crossmap Fri, 31 Jul 2026 03:52:22 -0000 /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v2.4.1 jwb@freebsd.org biology/salmon/1.10.3/v2.4.1 Thu, 30 Jul 2026 04:37:44 -0000 https://api.github.com/repos/COMBINE-lab/salmon/tarball/v2.4.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon 1.10.3 v2.4.1 biology http://www.freshports.org/biology/salmon/ salmon Fri, 31 Jul 2026 02:03:34 -0000 Fri, 31 Jul 2026 03:13:42 -0000 /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 40.00 jwb@freebsd.org biology/bbmap/39.34/40.00 Sat, 25 Jul 2026 03:16:13 -0000 http://www.freshports.org/biology/bbmap/ 40.00 biology 39.34 https://cfhcable.dl.sourceforge.net/project/bbmap/BBMap_40.00.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap Fri, 31 Jul 2026 02:45:49 -0000 bbmap Fri, 31 Jul 2026 02:03:35 -0000 /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.4.1 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.4.1 Fri, 24 Jul 2026 04:05:03 -0000 Fri, 31 Jul 2026 03:01:25 -0000 Fri, 31 Jul 2026 02:09:14 -0000 mongo-cxx-driver https://api.github.com/repos/mongodb/mongo-cxx-driver/tarball/r4.4.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver 4.0.0 http://www.freshports.org/devel/mongo-cxx-driver/ devel r4.4.1 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.37.0 to v0.47.0 jwb@freebsd.org science/csvtk/0.37.0/v0.47.0 Thu, 9 Jul 2026 03:14:28 -0000 Fri, 31 Jul 2026 02:34:42 -0000 csvtk Fri, 31 Jul 2026 03:39:09 -0000 science v0.47.0 http://www.freshports.org/science/csvtk/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk https://api.github.com/repos/golang/sys/tarball/refs/tags/v0.47.0 0.37.0 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 500 jwb@freebsd.org biology/ucsc-userapps/474/500 Wed, 8 Jul 2026 03:23:09 -0000 500 biology http://www.freshports.org/biology/ucsc-userapps/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v500.src.tgz 474 ucsc-userapps Fri, 31 Jul 2026 02:03:36 -0000 Fri, 31 Jul 2026 04:11:07 -0000 /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.23.1 jwb@freebsd.org biology/bio-mocha/1.20/1.23.1 Sun, 5 Jul 2026 03:25:39 -0000 1.20 https://api.github.com/repos/samtools/bcftools/tarball/1.23.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha http://www.freshports.org/biology/bio-mocha/ biology 1.23.1 Fri, 31 Jul 2026 03:56:11 -0000 Fri, 31 Jul 2026 02:03:39 -0000 bio-mocha /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sat, 20 Jun 2026 19:25:28 -0000 Fri, 31 Jul 2026 04:09:01 -0000 mmseqs2 Fri, 31 Jul 2026 02:03:40 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 https://api.github.com/repos/soedinglab/MMseqs2/tarball/vNatBiotech 17-b804f http://www.freshports.org/biology/mmseqs2/ vnatbiotech biology /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Sat, 20 Jun 2026 19:19:28 -0000 http://www.freshports.org/biology/bifrost/ paper biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost https://api.github.com/repos/pmelsted/bifrost/tarball/paper 1.3.5 Fri, 31 Jul 2026 03:40:59 -0000 bifrost Fri, 31 Jul 2026 02:03:48 -0000 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sat, 20 Jun 2026 19:10:46 -0000 freebayes Fri, 31 Jul 2026 02:03:44 -0000 Fri, 31 Jul 2026 02:54:49 -0000 1.3.9 https://api.github.com/repos/freebayes/freebayes/tarball/v1.3.10 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes v1.3.10 biology http://www.freshports.org/biology/freebayes/ /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Sat, 20 Jun 2026 19:09:34 -0000 Fri, 31 Jul 2026 03:06:44 -0000 ddocent Fri, 31 Jul 2026 02:03:45 -0000 https://api.github.com/repos/jpuritz/dDocent/tarball/v2.9.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent 2.7.8 http://www.freshports.org/biology/ddocent/ v2.9.8 biology /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Sat, 20 Jun 2026 18:46:14 -0000 http://www.freshports.org/biology/bfc/ submitted-v1 biology https://api.github.com/repos/lh3/bfc/tarball/refs/tags/submitted-v1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc g20150417 Fri, 31 Jul 2026 04:36:33 -0000 bfc Fri, 31 Jul 2026 02:03:34 -0000 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 20 Jun 2026 18:45:48 -0000 http://www.freshports.org/biology/vcflib/ v1.0.15 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib https://api.github.com/repos/vcflib/vcflib/tarball/v1.0.15 1.0.13 Fri, 31 Jul 2026 04:43:53 -0000 vcflib Fri, 31 Jul 2026 02:03:47 -0000 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Sat, 20 Jun 2026 18:42:16 -0000 https://api.github.com/repos/outpaddling/SPCM/tarball/0.5.9 0.5.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm http://www.freshports.org/sysutils/spcm/ 0.5.9 sysutils Fri, 31 Jul 2026 04:04:15 -0000 spcm Fri, 31 Jul 2026 02:38:21 -0000 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Sat, 20 Jun 2026 18:12:59 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools https://api.github.com/repos/ncbi/sra-tools/tarball/refs/tags/VDB-4760-2.9.7 3.4.1 biology vdb-4760-2.9.7 http://www.freshports.org/biology/sra-tools/ Fri, 31 Jul 2026 02:03:48 -0000 sra-tools Fri, 31 Jul 2026 03:27:10 -0000 /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.39.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.39.0 Thu, 4 Jun 2026 03:47:44 -0000 Fri, 31 Jul 2026 03:29:57 -0000 py-google-cloud-pubsub Fri, 31 Jul 2026 02:32:52 -0000 http://www.freshports.org/net/py-google-cloud-pubsub/ 2.39.0 net http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.39.0.tar.gz 2.32.0 /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.9.7 to 1.9.8 jwb@freebsd.org devel/py-rich-click/1.9.7/1.9.8 Fri, 29 May 2026 04:04:42 -0000 1.9.8 devel http://www.freshports.org/devel/py-rich-click/ https://pypi.org/packages/source/r/rich_click/rich_click-1.9.8.tar.gz 1.9.7 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click py-rich-click Fri, 31 Jul 2026 02:13:19 -0000 Fri, 31 Jul 2026 03:02:06 -0000 /jwb@freebsd.org.html Update found for port devel/R-cran-getopt: version 1.20.4 to 1.21.1 jwb@freebsd.org devel/R-cran-getopt/1.20.4/1.21.1 Tue, 28 Apr 2026 03:17:18 -0000 Fri, 31 Jul 2026 02:12:39 -0000 R-cran-getopt Fri, 31 Jul 2026 04:12:04 -0000 devel 1.21.1 http://www.freshports.org/devel/R-cran-getopt/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2FR-cran-getopt https://stat.ethz.ch/CRAN/src/contrib/getopt_1.21.1.tar.gz 1.20.4 /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 Fri, 31 Jul 2026 03:17:57 -0000 Fri, 31 Jul 2026 02:04:29 -0000 cutecom http://www.freshports.org/comms/cutecom/ comms 1.00.0 https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 0.60.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 0.5.2 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 http://www.freshports.org/biology/py-pydeseq2/ 0.5.4 biology Fri, 31 Jul 2026 02:55:28 -0000 py-pydeseq2 Fri, 31 Jul 2026 02:03:47 -0000 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 Fri, 31 Jul 2026 02:03:36 -0000 py-pywgsim Fri, 31 Jul 2026 03:44:29 -0000 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz 0.5.2 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim biology 0.6.0 http://www.freshports.org/biology/py-pywgsim/ /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 Fri, 31 Jul 2026 02:03:37 -0000 py-dna-features-viewer Fri, 31 Jul 2026 02:50:42 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz 3.1.3 biology 3.1.5 http://www.freshports.org/biology/py-dna-features-viewer/ /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 Fri, 31 Jul 2026 02:03:34 -0000 subread Fri, 31 Jul 2026 04:26:03 -0000 2.1.0 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread biology 2.1.1 http://www.freshports.org/biology/subread/ /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz 2.68 http://www.freshports.org/biology/stacks/ biology 2.69 Fri, 31 Jul 2026 03:32:03 -0000 Fri, 31 Jul 2026 02:03:51 -0000 stacks /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 Fri, 31 Jul 2026 02:10:07 -0000 lnphost Fri, 31 Jul 2026 04:27:17 -0000 devel 1.0 http://www.freshports.org/devel/lnphost/ http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip 1.0a http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost