/ New distfiles found via the portscout scanner Fri, 4 Apr 2025 21:10:27 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.15 to 39.20 jwb@freebsd.org biology/bbmap/39.15/39.20 Tue, 1 Apr 2025 03:35:29 -0000 biology Fri, 4 Apr 2025 02:03:08 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap 39.15 https://ixpeering.dl.sourceforge.net/project/bbmap/BBMap_39.20.tar.gz Fri, 4 Apr 2025 03:14:01 -0000 39.20 bbmap http://www.freshports.org/biology/bbmap/ /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.4 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.4 Tue, 1 Apr 2025 03:09:49 -0000 Fri, 4 Apr 2025 03:16:27 -0000 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.4.tar.gz 3.1.4 http://www.freshports.org/biology/py-dna-features-viewer/ py-dna-features-viewer biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer 3.1.3 Fri, 4 Apr 2025 02:03:10 -0000 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 479 jwb@freebsd.org biology/ucsc-userapps/474/479 Thu, 27 Mar 2025 02:54:22 -0000 https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v479.src.tgz Fri, 4 Apr 2025 03:31:48 -0000 ucsc-userapps http://www.freshports.org/biology/ucsc-userapps/ 479 Fri, 4 Apr 2025 02:03:09 -0000 474 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps biology /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.2.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.2.1/vdb-4760-2.9.7 Sat, 22 Mar 2025 03:03:00 -0000 vdb-4760-2.9.7 http://www.freshports.org/biology/sra-tools/ sra-tools Fri, 4 Apr 2025 03:04:19 -0000 https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools 3.2.1 Fri, 4 Apr 2025 02:03:20 -0000 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 biology 17-b804f http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 Fri, 4 Apr 2025 02:03:13 -0000 Fri, 4 Apr 2025 02:46:45 -0000 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ vnatbiotech http://www.freshports.org/biology/mmseqs2/ mmseqs2 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 http://www.freshports.org/biology/stacks/ stacks 2.69 Fri, 4 Apr 2025 03:00:52 -0000 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz 2.68 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks Fri, 4 Apr 2025 02:03:22 -0000 biology /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 v2.9.8 http://www.freshports.org/biology/ddocent/ ddocent Fri, 4 Apr 2025 02:34:41 -0000 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent 2.7.8 Fri, 4 Apr 2025 02:03:17 -0000 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 paper http://www.freshports.org/biology/bifrost/ bifrost Fri, 4 Apr 2025 03:19:23 -0000 https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost 1.3.5 Fri, 4 Apr 2025 02:03:20 -0000 /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.6.1 to 1.7.4 jwb@freebsd.org devel/py-rich-click/1.6.1/1.7.4 Wed, 13 Mar 2024 03:44:49 -0000 Fri, 4 Apr 2025 02:42:40 -0000 https://pypi.org/packages/source/r/rich-click/rich-click-1.7.4.tar.gz 1.7.4 http://www.freshports.org/devel/py-rich-click/ py-rich-click devel http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click 1.6.1 Fri, 4 Apr 2025 02:11:40 -0000 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 0.5.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm Fri, 4 Apr 2025 02:28:52 -0000 sysutils http://www.freshports.org/sysutils/spcm/ spcm 0.5.9 Fri, 4 Apr 2025 03:15:12 -0000 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools 3.5.2 Fri, 4 Apr 2025 02:03:18 -0000 biology Fri, 4 Apr 2025 02:57:48 -0000 https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz http://www.freshports.org/biology/py-deeptools/ py-deeptools 3.5.3 /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 http://www.freshports.org/biology/bfc/ bfc submitted-v1 Fri, 4 Apr 2025 03:11:18 -0000 https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc g20150417 Fri, 4 Apr 2025 02:03:08 -0000 biology /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 Fri, 4 Apr 2025 02:08:50 -0000 1.0a http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost devel lnphost http://www.freshports.org/devel/lnphost/ 1.0 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip Fri, 4 Apr 2025 03:22:18 -0000