/ New distfiles found via the portscout scanner Thu, 2 Apr 2026 08:09:48 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.81 jwb@freebsd.org biology/bbmap/39.34/39.81 Sun, 29 Mar 2026 03:34:29 -0000 http://www.freshports.org/biology/bbmap/ 39.34 bbmap 39.81 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap Thu, 2 Apr 2026 02:03:13 -0000 biology Thu, 2 Apr 2026 02:42:02 -0000 https://phoenixnap.dl.sourceforge.net/project/bbmap/BBMap_39.81.tar.gz /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Fri, 27 Mar 2026 02:40:38 -0000 http://www.freshports.org/biology/sra-tools/ 3.4.1 sra-tools vdb-4760-2.9.7 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools Thu, 2 Apr 2026 02:03:25 -0000 biology Thu, 2 Apr 2026 02:47:40 -0000 https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.2.0 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.2.0 Wed, 25 Mar 2026 03:12:30 -0000 mongo-cxx-driver 4.0.0 http://www.freshports.org/devel/mongo-cxx-driver/ https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.2.0?dummy=/ Thu, 2 Apr 2026 02:08:29 -0000 devel Thu, 2 Apr 2026 02:42:14 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver r4.2.0 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 21 Mar 2026 03:22:09 -0000 vcflib 1.0.13 http://www.freshports.org/biology/vcflib/ https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.15?dummy=/ Thu, 2 Apr 2026 02:03:25 -0000 biology Thu, 2 Apr 2026 03:37:20 -0000 v1.0.15 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 495 jwb@freebsd.org biology/ucsc-userapps/474/495 Sat, 21 Mar 2026 02:53:30 -0000 474 ucsc-userapps http://www.freshports.org/biology/ucsc-userapps/ https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v495.src.tgz 495 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps biology Thu, 2 Apr 2026 03:54:20 -0000 Thu, 2 Apr 2026 02:03:14 -0000 /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.36.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.36.0 Fri, 13 Mar 2026 04:08:34 -0000 https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.36.0.tar.gz Thu, 2 Apr 2026 02:25:18 -0000 net Thu, 2 Apr 2026 03:02:28 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub 2.36.0 2.32.0 py-google-cloud-pubsub http://www.freshports.org/net/py-google-cloud-pubsub/ /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v1.11.4 jwb@freebsd.org biology/salmon/1.10.3/v1.11.4 Thu, 12 Mar 2026 03:05:16 -0000 1.10.3 salmon http://www.freshports.org/biology/salmon/ https://codeload.github.com/https://api.github.com/repos/COMBINE-lab/salmon/v1.11.4?dummy=/ biology Thu, 2 Apr 2026 02:03:12 -0000 Thu, 2 Apr 2026 02:56:23 -0000 v1.11.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.42.0 jwb@freebsd.org science/csvtk/0.36.0/v0.42.0 Mon, 9 Mar 2026 03:17:37 -0000 https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.42.0?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk v0.42.0 science Thu, 2 Apr 2026 03:07:24 -0000 Thu, 2 Apr 2026 02:29:21 -0000 csvtk 0.36.0 http://www.freshports.org/science/csvtk/ /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 http://www.freshports.org/biology/py-pydeseq2/ 0.5.2 py-pydeseq2 0.5.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 biology Thu, 2 Apr 2026 02:49:07 -0000 Thu, 2 Apr 2026 02:03:24 -0000 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.21 to 1.22 jwb@freebsd.org science/orthanc-dicomweb/1.21/1.22 Wed, 3 Dec 2025 02:44:27 -0000 http://www.freshports.org/science/orthanc-dicomweb/ 1.21 orthanc-dicomweb http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb 1.22 Thu, 2 Apr 2026 02:29:02 -0000 science Thu, 2 Apr 2026 03:50:41 -0000 https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.22.tar.gz /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim 0.6.0 Thu, 2 Apr 2026 02:03:14 -0000 biology Thu, 2 Apr 2026 03:08:41 -0000 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz http://www.freshports.org/biology/py-pywgsim/ py-pywgsim 0.5.2 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 1.3.9 freebayes http://www.freshports.org/biology/freebayes/ https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes v1.3.10 biology Thu, 2 Apr 2026 02:47:52 -0000 Thu, 2 Apr 2026 02:03:21 -0000 /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 Thu, 2 Apr 2026 03:25:25 -0000 biology Thu, 2 Apr 2026 02:03:16 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha 1.21 https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ http://www.freshports.org/biology/bio-mocha/ bio-mocha 1.20 /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 biology Thu, 2 Apr 2026 04:01:01 -0000 Thu, 2 Apr 2026 02:03:15 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer 3.1.5 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz http://www.freshports.org/biology/py-dna-features-viewer/ py-dna-features-viewer 3.1.3 /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz 2.1.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread biology Thu, 2 Apr 2026 04:02:59 -0000 Thu, 2 Apr 2026 02:03:13 -0000 subread 2.1.0 http://www.freshports.org/biology/subread/ /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 vnatbiotech Thu, 2 Apr 2026 03:19:12 -0000 biology Thu, 2 Apr 2026 02:03:18 -0000 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ http://www.freshports.org/biology/mmseqs2/ 17-b804f mmseqs2 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 Thu, 2 Apr 2026 02:03:28 -0000 biology Thu, 2 Apr 2026 03:12:50 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks 2.69 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz http://www.freshports.org/biology/stacks/ stacks 2.68 /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 biology Thu, 2 Apr 2026 02:03:22 -0000 Thu, 2 Apr 2026 03:41:28 -0000 v2.9.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ http://www.freshports.org/biology/ddocent/ ddocent 2.7.8 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 http://www.freshports.org/biology/bifrost/ bifrost 1.3.5 biology Thu, 2 Apr 2026 03:30:22 -0000 Thu, 2 Apr 2026 02:03:25 -0000 paper http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ 0.5.9 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm sysutils Thu, 2 Apr 2026 02:33:04 -0000 Thu, 2 Apr 2026 03:36:39 -0000 spcm 0.5.8 http://www.freshports.org/sysutils/spcm/ /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 3.5.2 py-deeptools http://www.freshports.org/biology/py-deeptools/ https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz 3.5.3 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools biology Thu, 2 Apr 2026 02:41:16 -0000 Thu, 2 Apr 2026 02:03:23 -0000 /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 http://www.freshports.org/biology/bfc/ bfc g20150417 submitted-v1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc biology Thu, 2 Apr 2026 02:03:13 -0000 Thu, 2 Apr 2026 02:56:07 -0000 https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 Thu, 2 Apr 2026 02:09:17 -0000 devel Thu, 2 Apr 2026 03:17:09 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost 1.0 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip http://www.freshports.org/devel/lnphost/ 1.0a lnphost