/ New distfiles found via the portscout scanner Fri, 27 Feb 2026 16:44:04 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.77 jwb@freebsd.org biology/bbmap/39.34/39.77 Fri, 27 Feb 2026 02:47:31 -0000 http://www.freshports.org/biology/bbmap/ https://cfhcable.dl.sourceforge.net/project/bbmap/BBMap_39.77.tar.gz biology Fri, 27 Feb 2026 02:47:31 -0000 bbmap 39.34 Fri, 27 Feb 2026 02:03:12 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap 39.77 /jwb@freebsd.org.html Update found for port biology/kallisto: version 0.51.1 to v0.52.0 jwb@freebsd.org biology/kallisto/0.51.1/v0.52.0 Thu, 26 Feb 2026 02:56:47 -0000 v0.52.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fkallisto Fri, 27 Feb 2026 02:03:21 -0000 0.51.1 kallisto Fri, 27 Feb 2026 03:49:47 -0000 biology https://codeload.github.com/https://api.github.com/repos/pachterlab/kallisto/v0.52.0?dummy=/ http://www.freshports.org/biology/kallisto/ /jwb@freebsd.org.html Update found for port biology/py-macs3: version 3.0.3 to v3.0.4 jwb@freebsd.org biology/py-macs3/3.0.3/v3.0.4 Tue, 24 Feb 2026 03:09:44 -0000 http://www.freshports.org/biology/py-macs3/ Fri, 27 Feb 2026 03:25:27 -0000 biology https://codeload.github.com/https://api.github.com/repos/macs3-project/MACS/v3.0.4?dummy=/ py-macs3 Fri, 27 Feb 2026 02:03:12 -0000 3.0.3 v3.0.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-macs3 /jwb@freebsd.org.html Update found for port biology/bowtie2: version 2.5.4 to v2.5.5 jwb@freebsd.org biology/bowtie2/2.5.4/v2.5.5 Wed, 18 Feb 2026 03:07:35 -0000 2.5.4 Fri, 27 Feb 2026 02:03:20 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbowtie2 v2.5.5 http://www.freshports.org/biology/bowtie2/ https://codeload.github.com/https://api.github.com/repos/BenLangmead/bowtie2/v2.5.5?dummy=/ Fri, 27 Feb 2026 02:52:46 -0000 biology bowtie2 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.41.0 jwb@freebsd.org science/csvtk/0.36.0/v0.41.0 Mon, 9 Feb 2026 03:09:46 -0000 Fri, 27 Feb 2026 02:28:49 -0000 0.36.0 v0.41.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk http://www.freshports.org/science/csvtk/ science Fri, 27 Feb 2026 03:59:13 -0000 https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.41.0?dummy=/ csvtk /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.35.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.35.0 Fri, 6 Feb 2026 03:15:06 -0000 py-google-cloud-pubsub http://www.freshports.org/net/py-google-cloud-pubsub/ Fri, 27 Feb 2026 03:18:21 -0000 net https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.35.0.tar.gz 2.35.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub Fri, 27 Feb 2026 02:27:08 -0000 2.32.0 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 493 jwb@freebsd.org biology/ucsc-userapps/474/493 Thu, 5 Feb 2026 02:56:23 -0000 493 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps Fri, 27 Feb 2026 02:03:13 -0000 474 ucsc-userapps http://www.freshports.org/biology/ucsc-userapps/ biology Fri, 27 Feb 2026 03:13:47 -0000 https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v493.src.tgz /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 Fri, 27 Feb 2026 03:02:07 -0000 biology https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz http://www.freshports.org/biology/py-pydeseq2/ py-pydeseq2 Fri, 27 Feb 2026 02:03:23 -0000 0.5.2 0.5.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.3.0 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.3.0/vdb-4760-2.9.7 Thu, 18 Dec 2025 03:45:07 -0000 sra-tools Fri, 27 Feb 2026 03:49:57 -0000 biology https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ http://www.freshports.org/biology/sra-tools/ vdb-4760-2.9.7 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools Fri, 27 Feb 2026 02:03:24 -0000 3.3.0 /jwb@freebsd.org.html Update found for port biology/samtools: version 1.22 to 1.23 jwb@freebsd.org biology/samtools/1.22/1.23 Thu, 18 Dec 2025 02:59:10 -0000 Fri, 27 Feb 2026 04:00:07 -0000 biology https://codeload.github.com/https://api.github.com/repos/samtools/samtools/1.23?dummy=/ http://www.freshports.org/biology/samtools/ samtools Fri, 27 Feb 2026 02:03:23 -0000 1.22 1.23 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsamtools /jwb@freebsd.org.html Update found for port biology/bcftools: version 1.22 to 1.23 jwb@freebsd.org biology/bcftools/1.22/1.23 Wed, 17 Dec 2025 02:54:50 -0000 bcftools http://www.freshports.org/biology/bcftools/ Fri, 27 Feb 2026 03:47:36 -0000 biology https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.23?dummy=/ 1.23 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbcftools Fri, 27 Feb 2026 02:03:18 -0000 1.22 /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.21 to 1.22 jwb@freebsd.org science/orthanc-dicomweb/1.21/1.22 Wed, 3 Dec 2025 02:44:27 -0000 orthanc-dicomweb https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.22.tar.gz science Fri, 27 Feb 2026 02:52:18 -0000 http://www.freshports.org/science/orthanc-dicomweb/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb 1.22 1.21 Fri, 27 Feb 2026 02:28:32 -0000 /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.1.4 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.1.4 Sat, 11 Oct 2025 02:42:38 -0000 r4.1.4 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver Fri, 27 Feb 2026 02:08:21 -0000 4.0.0 mongo-cxx-driver devel Fri, 27 Feb 2026 03:16:23 -0000 https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.1.4?dummy=/ http://www.freshports.org/devel/mongo-cxx-driver/ /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 Fri, 27 Feb 2026 02:03:13 -0000 0.5.2 0.6.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim http://www.freshports.org/biology/py-pywgsim/ Fri, 27 Feb 2026 03:09:00 -0000 biology https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz py-pywgsim /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes v1.3.10 1.3.9 Fri, 27 Feb 2026 02:03:20 -0000 freebayes https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ biology Fri, 27 Feb 2026 03:17:25 -0000 http://www.freshports.org/biology/freebayes/ /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 http://www.freshports.org/biology/bio-mocha/ https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ biology Fri, 27 Feb 2026 03:12:47 -0000 bio-mocha 1.20 Fri, 27 Feb 2026 02:03:15 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha 1.21 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.14 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.14 Mon, 19 May 2025 02:38:55 -0000 vcflib biology Fri, 27 Feb 2026 03:26:43 -0000 https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.14?dummy=/ http://www.freshports.org/biology/vcflib/ v1.0.14 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib Fri, 27 Feb 2026 02:03:23 -0000 1.0.13 /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 3.1.3 Fri, 27 Feb 2026 02:03:14 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer 3.1.5 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz Fri, 27 Feb 2026 03:36:44 -0000 biology http://www.freshports.org/biology/py-dna-features-viewer/ py-dna-features-viewer /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 2.1.0 Fri, 27 Feb 2026 02:03:12 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread 2.1.1 http://www.freshports.org/biology/subread/ https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz biology Fri, 27 Feb 2026 03:35:38 -0000 subread /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 http://www.freshports.org/biology/mmseqs2/ biology Fri, 27 Feb 2026 02:43:48 -0000 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ mmseqs2 Fri, 27 Feb 2026 02:03:17 -0000 17-b804f vnatbiotech http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks 2.69 2.68 Fri, 27 Feb 2026 02:03:27 -0000 stacks http://www.freshports.org/biology/stacks/ https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz biology Fri, 27 Feb 2026 03:20:20 -0000 /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 2.7.8 Fri, 27 Feb 2026 02:03:21 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent v2.9.8 http://www.freshports.org/biology/ddocent/ https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ Fri, 27 Feb 2026 03:21:12 -0000 biology ddocent /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ Fri, 27 Feb 2026 03:10:18 -0000 biology http://www.freshports.org/biology/bifrost/ bifrost 1.3.5 Fri, 27 Feb 2026 02:03:24 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost paper /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 Fri, 27 Feb 2026 02:32:21 -0000 0.5.8 0.5.9 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm http://www.freshports.org/sysutils/spcm/ Fri, 27 Feb 2026 03:34:11 -0000 sysutils https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ spcm /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 http://www.freshports.org/biology/py-deeptools/ biology Fri, 27 Feb 2026 03:50:05 -0000 https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz py-deeptools Fri, 27 Feb 2026 02:03:22 -0000 3.5.2 3.5.3 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ biology Fri, 27 Feb 2026 04:02:06 -0000 http://www.freshports.org/biology/bfc/ bfc g20150417 Fri, 27 Feb 2026 02:03:12 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc submitted-v1 /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 http://www.freshports.org/devel/lnphost/ http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip devel Fri, 27 Feb 2026 02:41:13 -0000 lnphost 1.0a Fri, 27 Feb 2026 02:09:09 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost 1.0