/ New distfiles found via the portscout scanner Thu, 27 Aug 2026 23:17:35 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.39.2 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.39.2 Wed, 26 Aug 2026 03:36:16 -0000 http://www.freshports.org/net/py-google-cloud-pubsub/ py-google-cloud-pubsub https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.39.2.tar.gz Thu, 27 Aug 2026 03:57:51 -0000 net Thu, 27 Aug 2026 02:26:49 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub 2.32.0 2.39.2 /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v2.6.0 jwb@freebsd.org biology/salmon/1.10.3/v2.6.0 Tue, 25 Aug 2026 04:08:57 -0000 biology Thu, 27 Aug 2026 02:55:51 -0000 https://api.github.com/repos/COMBINE-lab/salmon/tarball/v2.6.0 http://www.freshports.org/biology/salmon/ salmon v2.6.0 1.10.3 Thu, 27 Aug 2026 02:03:28 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon /jwb@freebsd.org.html Update found for port science/orthanc-postgresql: version 10.2 to 10.3 jwb@freebsd.org science/orthanc-postgresql/10.2/10.3 Thu, 20 Aug 2026 04:07:13 -0000 science Thu, 27 Aug 2026 04:18:05 -0000 https://orthanc.uclouvain.be/downloads/sources/orthanc-postgresql/OrthancPostgreSQL-10.3.tar.gz http://www.freshports.org/science/orthanc-postgresql/ orthanc-postgresql 10.2 10.3 Thu, 27 Aug 2026 02:28:54 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-postgresql /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.23 to 1.24 jwb@freebsd.org science/orthanc-dicomweb/1.23/1.24 Thu, 20 Aug 2026 02:57:26 -0000 http://www.freshports.org/science/orthanc-dicomweb/ orthanc-dicomweb https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.24.tar.gz Thu, 27 Aug 2026 04:31:47 -0000 science http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb Thu, 27 Aug 2026 02:28:15 -0000 1.24 1.23 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.9 to paper jwb@freebsd.org biology/bifrost/1.3.9/paper Wed, 12 Aug 2026 04:01:36 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost Thu, 27 Aug 2026 02:03:42 -0000 1.3.9 paper bifrost http://www.freshports.org/biology/bifrost/ https://api.github.com/repos/pmelsted/bifrost/tarball/paper Thu, 27 Aug 2026 04:42:27 -0000 biology /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.4.1 to r4.5.0 jwb@freebsd.org devel/mongo-cxx-driver/4.4.1/r4.5.0 Wed, 5 Aug 2026 04:11:53 -0000 4.4.1 r4.5.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver Thu, 27 Aug 2026 02:09:12 -0000 Thu, 27 Aug 2026 04:27:38 -0000 devel mongo-cxx-driver http://www.freshports.org/devel/mongo-cxx-driver/ https://api.github.com/repos/mongodb/mongo-cxx-driver/tarball/r4.5.0 /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 40.02 jwb@freebsd.org biology/bbmap/39.34/40.02 Tue, 4 Aug 2026 03:57:53 -0000 40.02 39.34 Thu, 27 Aug 2026 02:03:29 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap Thu, 27 Aug 2026 04:09:36 -0000 biology https://cfhcable.dl.sourceforge.net/project/bbmap/BBMap_40.02.tar.gz http://www.freshports.org/biology/bbmap/ bbmap /jwb@freebsd.org.html Update found for port biology/hisat2: version 2.2.2 to v2.2.3 jwb@freebsd.org biology/hisat2/2.2.2/v2.2.3 Sat, 1 Aug 2026 04:23:50 -0000 Thu, 27 Aug 2026 04:10:12 -0000 biology https://api.github.com/repos/DaehwanKimLab/hisat2/tarball/v2.2.3 hisat2 http://www.freshports.org/biology/hisat2/ 2.2.2 v2.2.3 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fhisat2 Thu, 27 Aug 2026 02:03:39 -0000 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.37.0 to v0.47.0 jwb@freebsd.org science/csvtk/0.37.0/v0.47.0 Thu, 9 Jul 2026 03:14:28 -0000 csvtk http://www.freshports.org/science/csvtk/ https://api.github.com/repos/golang/sys/tarball/refs/tags/v0.47.0 science Thu, 27 Aug 2026 04:41:05 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk Thu, 27 Aug 2026 02:28:32 -0000 v0.47.0 0.37.0 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 500 jwb@freebsd.org biology/ucsc-userapps/474/500 Wed, 8 Jul 2026 03:23:09 -0000 500 474 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps Thu, 27 Aug 2026 02:03:30 -0000 Thu, 27 Aug 2026 04:41:44 -0000 biology http://www.freshports.org/biology/ucsc-userapps/ ucsc-userapps https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v500.src.tgz /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.23.1 jwb@freebsd.org biology/bio-mocha/1.20/1.23.1 Sun, 5 Jul 2026 03:25:39 -0000 1.23.1 1.20 Thu, 27 Aug 2026 02:03:33 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha biology Thu, 27 Aug 2026 04:27:36 -0000 http://www.freshports.org/biology/bio-mocha/ bio-mocha https://api.github.com/repos/samtools/bcftools/tarball/1.23.1 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sat, 20 Jun 2026 19:25:28 -0000 17-b804f vnatbiotech Thu, 27 Aug 2026 02:03:34 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 Thu, 27 Aug 2026 03:29:09 -0000 biology https://api.github.com/repos/soedinglab/MMseqs2/tarball/vNatBiotech http://www.freshports.org/biology/mmseqs2/ mmseqs2 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sat, 20 Jun 2026 19:10:46 -0000 1.3.9 v1.3.10 Thu, 27 Aug 2026 02:03:38 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes Thu, 27 Aug 2026 03:52:44 -0000 biology https://api.github.com/repos/freebayes/freebayes/tarball/v1.3.10 http://www.freshports.org/biology/freebayes/ freebayes /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Sat, 20 Jun 2026 19:09:34 -0000 http://www.freshports.org/biology/ddocent/ ddocent https://api.github.com/repos/jpuritz/dDocent/tarball/v2.9.8 biology Thu, 27 Aug 2026 03:42:25 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent Thu, 27 Aug 2026 02:03:38 -0000 v2.9.8 2.7.8 /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Sat, 20 Jun 2026 18:46:14 -0000 Thu, 27 Aug 2026 03:08:23 -0000 biology https://api.github.com/repos/lh3/bfc/tarball/refs/tags/submitted-v1 http://www.freshports.org/biology/bfc/ bfc submitted-v1 g20150417 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc Thu, 27 Aug 2026 02:03:29 -0000 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 20 Jun 2026 18:45:48 -0000 biology Thu, 27 Aug 2026 04:05:01 -0000 https://api.github.com/repos/vcflib/vcflib/tarball/v1.0.15 http://www.freshports.org/biology/vcflib/ vcflib v1.0.15 1.0.13 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib Thu, 27 Aug 2026 02:03:41 -0000 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Sat, 20 Jun 2026 18:12:59 -0000 vdb-4760-2.9.7 3.4.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools Thu, 27 Aug 2026 02:03:42 -0000 biology Thu, 27 Aug 2026 03:43:18 -0000 sra-tools http://www.freshports.org/biology/sra-tools/ https://api.github.com/repos/ncbi/sra-tools/tarball/refs/tags/VDB-4760-2.9.7 /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.9.7 to 1.9.8 jwb@freebsd.org devel/py-rich-click/1.9.7/1.9.8 Fri, 29 May 2026 04:04:42 -0000 1.9.8 1.9.7 Thu, 27 Aug 2026 02:13:15 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click Thu, 27 Aug 2026 04:42:19 -0000 devel https://pypi.org/packages/source/r/rich_click/rich_click-1.9.8.tar.gz py-rich-click http://www.freshports.org/devel/py-rich-click/ /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom Thu, 27 Aug 2026 02:04:23 -0000 0.60.0 1.00.0 https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 cutecom http://www.freshports.org/comms/cutecom/ comms Thu, 27 Aug 2026 03:47:41 -0000 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 http://www.freshports.org/biology/py-pydeseq2/ py-pydeseq2 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz biology Thu, 27 Aug 2026 03:47:17 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 Thu, 27 Aug 2026 02:03:40 -0000 0.5.2 0.5.4 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz http://www.freshports.org/biology/py-pywgsim/ py-pywgsim biology Thu, 27 Aug 2026 03:21:14 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim Thu, 27 Aug 2026 02:03:30 -0000 0.5.2 0.6.0 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz stacks http://www.freshports.org/biology/stacks/ Thu, 27 Aug 2026 03:58:37 -0000 biology Thu, 27 Aug 2026 02:03:44 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks 2.68 2.69 /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 lnphost http://www.freshports.org/devel/lnphost/ http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip devel Thu, 27 Aug 2026 04:08:29 -0000 Thu, 27 Aug 2026 02:10:04 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost 1.0a 1.0