/ New distfiles found via the portscout scanner Sun, 30 Aug 2026 23:20:59 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v2.6.0 jwb@freebsd.org biology/salmon/1.10.3/v2.6.0 Tue, 25 Aug 2026 04:08:57 -0000 biology http://www.freshports.org/biology/salmon/ salmon Sun, 30 Aug 2026 02:03:34 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon Sun, 30 Aug 2026 03:04:08 -0000 v2.6.0 1.10.3 https://api.github.com/repos/COMBINE-lab/salmon/tarball/v2.6.0 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.9 to paper jwb@freebsd.org biology/bifrost/1.3.9/paper Wed, 12 Aug 2026 04:01:36 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost Sun, 30 Aug 2026 03:03:22 -0000 paper bifrost Sun, 30 Aug 2026 02:03:47 -0000 http://www.freshports.org/biology/bifrost/ biology 1.3.9 https://api.github.com/repos/pmelsted/bifrost/tarball/paper /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 40.02 jwb@freebsd.org biology/bbmap/39.34/40.02 Tue, 4 Aug 2026 03:57:53 -0000 Sun, 30 Aug 2026 02:03:34 -0000 bbmap biology http://www.freshports.org/biology/bbmap/ 40.02 Sun, 30 Aug 2026 02:56:42 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap https://cfhcable.dl.sourceforge.net/project/bbmap/BBMap_40.02.tar.gz 39.34 /jwb@freebsd.org.html Update found for port biology/hisat2: version 2.2.2 to v2.2.3 jwb@freebsd.org biology/hisat2/2.2.2/v2.2.3 Sat, 1 Aug 2026 04:23:50 -0000 https://api.github.com/repos/DaehwanKimLab/hisat2/tarball/v2.2.3 2.2.2 Sun, 30 Aug 2026 02:03:45 -0000 hisat2 biology http://www.freshports.org/biology/hisat2/ v2.2.3 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fhisat2 Sun, 30 Aug 2026 02:50:42 -0000 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.37.0 to v0.47.0 jwb@freebsd.org science/csvtk/0.37.0/v0.47.0 Thu, 9 Jul 2026 03:14:28 -0000 0.37.0 https://api.github.com/repos/golang/sys/tarball/refs/tags/v0.47.0 science http://www.freshports.org/science/csvtk/ csvtk Sun, 30 Aug 2026 02:33:50 -0000 Sun, 30 Aug 2026 03:20:00 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk v0.47.0 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 500 jwb@freebsd.org biology/ucsc-userapps/474/500 Wed, 8 Jul 2026 03:23:09 -0000 http://www.freshports.org/biology/ucsc-userapps/ biology ucsc-userapps Sun, 30 Aug 2026 02:03:35 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps Sun, 30 Aug 2026 03:42:44 -0000 500 474 https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v500.src.tgz /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.23.1 jwb@freebsd.org biology/bio-mocha/1.20/1.23.1 Sun, 5 Jul 2026 03:25:39 -0000 biology http://www.freshports.org/biology/bio-mocha/ Sun, 30 Aug 2026 02:03:38 -0000 bio-mocha 1.23.1 Sun, 30 Aug 2026 03:50:24 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha https://api.github.com/repos/samtools/bcftools/tarball/1.23.1 1.20 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sat, 20 Jun 2026 19:25:28 -0000 Sun, 30 Aug 2026 04:25:40 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 vnatbiotech mmseqs2 Sun, 30 Aug 2026 02:03:40 -0000 http://www.freshports.org/biology/mmseqs2/ biology 17-b804f https://api.github.com/repos/soedinglab/MMseqs2/tarball/vNatBiotech /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sat, 20 Jun 2026 19:10:46 -0000 http://www.freshports.org/biology/freebayes/ biology Sun, 30 Aug 2026 02:03:43 -0000 freebayes v1.3.10 Sun, 30 Aug 2026 03:16:51 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes https://api.github.com/repos/freebayes/freebayes/tarball/v1.3.10 1.3.9 /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Sat, 20 Jun 2026 19:09:34 -0000 2.7.8 https://api.github.com/repos/jpuritz/dDocent/tarball/v2.9.8 http://www.freshports.org/biology/ddocent/ biology ddocent Sun, 30 Aug 2026 02:03:44 -0000 Sun, 30 Aug 2026 03:38:26 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent v2.9.8 /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Sat, 20 Jun 2026 18:46:14 -0000 http://www.freshports.org/biology/bfc/ biology bfc Sun, 30 Aug 2026 02:03:34 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc Sun, 30 Aug 2026 03:13:24 -0000 submitted-v1 g20150417 https://api.github.com/repos/lh3/bfc/tarball/refs/tags/submitted-v1 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 20 Jun 2026 18:45:48 -0000 https://api.github.com/repos/vcflib/vcflib/tarball/v1.0.15 1.0.13 v1.0.15 Sun, 30 Aug 2026 04:09:04 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib biology http://www.freshports.org/biology/vcflib/ Sun, 30 Aug 2026 02:03:46 -0000 vcflib /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Sat, 20 Jun 2026 18:12:59 -0000 sra-tools Sun, 30 Aug 2026 02:03:47 -0000 http://www.freshports.org/biology/sra-tools/ biology Sun, 30 Aug 2026 03:05:20 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools vdb-4760-2.9.7 3.4.1 https://api.github.com/repos/ncbi/sra-tools/tarball/refs/tags/VDB-4760-2.9.7 /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.9.7 to 1.9.8 jwb@freebsd.org devel/py-rich-click/1.9.7/1.9.8 Fri, 29 May 2026 04:04:42 -0000 http://www.freshports.org/devel/py-rich-click/ devel Sun, 30 Aug 2026 02:13:22 -0000 py-rich-click 1.9.8 Sun, 30 Aug 2026 02:43:27 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click https://pypi.org/packages/source/r/rich_click/rich_click-1.9.8.tar.gz 1.9.7 /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 0.60.0 https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 http://www.freshports.org/comms/cutecom/ comms cutecom Sun, 30 Aug 2026 02:04:29 -0000 Sun, 30 Aug 2026 03:00:23 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom 1.00.0 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz 2.68 Sun, 30 Aug 2026 02:03:50 -0000 stacks biology http://www.freshports.org/biology/stacks/ 2.69 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks Sun, 30 Aug 2026 02:52:16 -0000