/ New distfiles found via the portscout scanner Mon, 24 Aug 2026 22:58:52 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port science/orthanc-postgresql: version 10.2 to 10.3 jwb@freebsd.org science/orthanc-postgresql/10.2/10.3 Thu, 20 Aug 2026 04:07:13 -0000 orthanc-postgresql science Mon, 24 Aug 2026 04:16:39 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-postgresql http://www.freshports.org/science/orthanc-postgresql/ https://orthanc.uclouvain.be/downloads/sources/orthanc-postgresql/OrthancPostgreSQL-10.3.tar.gz 10.3 10.2 Mon, 24 Aug 2026 02:35:06 -0000 /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.23 to 1.24 jwb@freebsd.org science/orthanc-dicomweb/1.23/1.24 Thu, 20 Aug 2026 02:57:26 -0000 http://www.freshports.org/science/orthanc-dicomweb/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb Mon, 24 Aug 2026 04:01:00 -0000 science orthanc-dicomweb 1.23 Mon, 24 Aug 2026 02:34:27 -0000 1.24 https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.24.tar.gz /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.9 to paper jwb@freebsd.org biology/bifrost/1.3.9/paper Wed, 12 Aug 2026 04:01:36 -0000 http://www.freshports.org/biology/bifrost/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost bifrost Mon, 24 Aug 2026 03:50:13 -0000 biology Mon, 24 Aug 2026 02:03:45 -0000 1.3.9 paper https://api.github.com/repos/pmelsted/bifrost/tarball/paper /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v2.5.1 jwb@freebsd.org biology/salmon/1.10.3/v2.5.1 Tue, 11 Aug 2026 03:38:48 -0000 Mon, 24 Aug 2026 02:03:31 -0000 1.10.3 v2.5.1 https://api.github.com/repos/COMBINE-lab/salmon/tarball/v2.5.1 http://www.freshports.org/biology/salmon/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon Mon, 24 Aug 2026 04:46:13 -0000 biology salmon /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.39.1 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.39.1 Fri, 7 Aug 2026 04:37:00 -0000 2.39.1 https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.39.1.tar.gz Mon, 24 Aug 2026 02:32:58 -0000 2.32.0 py-google-cloud-pubsub Mon, 24 Aug 2026 03:31:28 -0000 net http://www.freshports.org/net/py-google-cloud-pubsub/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.4.1 to r4.5.0 jwb@freebsd.org devel/mongo-cxx-driver/4.4.1/r4.5.0 Wed, 5 Aug 2026 04:11:53 -0000 4.4.1 Mon, 24 Aug 2026 02:09:15 -0000 r4.5.0 https://api.github.com/repos/mongodb/mongo-cxx-driver/tarball/r4.5.0 http://www.freshports.org/devel/mongo-cxx-driver/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver mongo-cxx-driver Mon, 24 Aug 2026 03:58:04 -0000 devel /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 40.02 jwb@freebsd.org biology/bbmap/39.34/40.02 Tue, 4 Aug 2026 03:57:53 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap http://www.freshports.org/biology/bbmap/ bbmap biology Mon, 24 Aug 2026 04:09:15 -0000 Mon, 24 Aug 2026 02:03:32 -0000 39.34 https://cfhcable.dl.sourceforge.net/project/bbmap/BBMap_40.02.tar.gz 40.02 /jwb@freebsd.org.html Update found for port biology/hisat2: version 2.2.2 to v2.2.3 jwb@freebsd.org biology/hisat2/2.2.2/v2.2.3 Sat, 1 Aug 2026 04:23:50 -0000 Mon, 24 Aug 2026 02:03:43 -0000 2.2.2 v2.2.3 https://api.github.com/repos/DaehwanKimLab/hisat2/tarball/v2.2.3 http://www.freshports.org/biology/hisat2/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fhisat2 hisat2 Mon, 24 Aug 2026 03:25:01 -0000 biology /jwb@freebsd.org.html Update found for port biology/py-crossmap: version 0.7.3 to 0.7.4 jwb@freebsd.org biology/py-crossmap/0.7.3/0.7.4 Fri, 31 Jul 2026 03:52:22 -0000 py-crossmap Mon, 24 Aug 2026 04:22:55 -0000 biology http://www.freshports.org/biology/py-crossmap/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-crossmap 0.7.4 https://pypi.org/packages/source/c/crossmap/crossmap-0.7.4.tar.gz Mon, 24 Aug 2026 02:03:41 -0000 0.7.3 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.37.0 to v0.47.0 jwb@freebsd.org science/csvtk/0.37.0/v0.47.0 Thu, 9 Jul 2026 03:14:28 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk http://www.freshports.org/science/csvtk/ science Mon, 24 Aug 2026 04:02:17 -0000 csvtk Mon, 24 Aug 2026 02:34:45 -0000 0.37.0 https://api.github.com/repos/golang/sys/tarball/refs/tags/v0.47.0 v0.47.0 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 500 jwb@freebsd.org biology/ucsc-userapps/474/500 Wed, 8 Jul 2026 03:23:09 -0000 biology Mon, 24 Aug 2026 03:38:40 -0000 ucsc-userapps http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps http://www.freshports.org/biology/ucsc-userapps/ https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v500.src.tgz 500 Mon, 24 Aug 2026 02:03:33 -0000 474 /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.23.1 jwb@freebsd.org biology/bio-mocha/1.20/1.23.1 Sun, 5 Jul 2026 03:25:39 -0000 https://api.github.com/repos/samtools/bcftools/tarball/1.23.1 1.23.1 Mon, 24 Aug 2026 02:03:36 -0000 1.20 biology Mon, 24 Aug 2026 03:20:38 -0000 bio-mocha http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha http://www.freshports.org/biology/bio-mocha/ /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sat, 20 Jun 2026 19:25:28 -0000 Mon, 24 Aug 2026 02:03:37 -0000 17-b804f vnatbiotech https://api.github.com/repos/soedinglab/MMseqs2/tarball/vNatBiotech http://www.freshports.org/biology/mmseqs2/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 Mon, 24 Aug 2026 04:20:23 -0000 biology mmseqs2 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sat, 20 Jun 2026 19:10:46 -0000 https://api.github.com/repos/freebayes/freebayes/tarball/v1.3.10 v1.3.10 1.3.9 Mon, 24 Aug 2026 02:03:41 -0000 biology Mon, 24 Aug 2026 02:54:46 -0000 freebayes http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes http://www.freshports.org/biology/freebayes/ /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Sat, 20 Jun 2026 19:09:34 -0000 ddocent Mon, 24 Aug 2026 04:16:31 -0000 biology http://www.freshports.org/biology/ddocent/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent v2.9.8 https://api.github.com/repos/jpuritz/dDocent/tarball/v2.9.8 2.7.8 Mon, 24 Aug 2026 02:03:41 -0000 /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Sat, 20 Jun 2026 18:46:14 -0000 bfc Mon, 24 Aug 2026 03:46:05 -0000 biology http://www.freshports.org/biology/bfc/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc submitted-v1 https://api.github.com/repos/lh3/bfc/tarball/refs/tags/submitted-v1 g20150417 Mon, 24 Aug 2026 02:03:32 -0000 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 20 Jun 2026 18:45:48 -0000 https://api.github.com/repos/vcflib/vcflib/tarball/v1.0.15 v1.0.15 1.0.13 Mon, 24 Aug 2026 02:03:44 -0000 vcflib biology Mon, 24 Aug 2026 04:29:12 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib http://www.freshports.org/biology/vcflib/ /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Sat, 20 Jun 2026 18:12:59 -0000 Mon, 24 Aug 2026 02:03:45 -0000 3.4.1 vdb-4760-2.9.7 https://api.github.com/repos/ncbi/sra-tools/tarball/refs/tags/VDB-4760-2.9.7 http://www.freshports.org/biology/sra-tools/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools sra-tools Mon, 24 Aug 2026 02:54:55 -0000 biology /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.9.7 to 1.9.8 jwb@freebsd.org devel/py-rich-click/1.9.7/1.9.8 Fri, 29 May 2026 04:04:42 -0000 1.9.8 https://pypi.org/packages/source/r/rich_click/rich_click-1.9.8.tar.gz Mon, 24 Aug 2026 02:13:22 -0000 1.9.7 py-rich-click Mon, 24 Aug 2026 03:44:27 -0000 devel http://www.freshports.org/devel/py-rich-click/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click /jwb@freebsd.org.html Update found for port devel/R-cran-getopt: version 1.20.4 to 1.21.1 jwb@freebsd.org devel/R-cran-getopt/1.20.4/1.21.1 Tue, 28 Apr 2026 03:17:18 -0000 Mon, 24 Aug 2026 04:24:15 -0000 devel R-cran-getopt http://www.freshports.org/devel/R-cran-getopt/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2FR-cran-getopt 1.21.1 https://stat.ethz.ch/CRAN/src/contrib/getopt_1.21.1.tar.gz Mon, 24 Aug 2026 02:12:42 -0000 1.20.4 /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 Mon, 24 Aug 2026 03:29:23 -0000 comms cutecom http://www.freshports.org/comms/cutecom/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom 1.00.0 https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 Mon, 24 Aug 2026 02:04:27 -0000 0.60.0 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 py-pydeseq2 Mon, 24 Aug 2026 03:09:55 -0000 biology http://www.freshports.org/biology/py-pydeseq2/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 0.5.4 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz Mon, 24 Aug 2026 02:03:43 -0000 0.5.2 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 http://www.freshports.org/biology/py-pywgsim/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim Mon, 24 Aug 2026 03:04:51 -0000 biology py-pywgsim Mon, 24 Aug 2026 02:03:33 -0000 0.5.2 0.6.0 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 biology Mon, 24 Aug 2026 03:44:58 -0000 py-dna-features-viewer http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer http://www.freshports.org/biology/py-dna-features-viewer/ https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz 3.1.5 3.1.3 Mon, 24 Aug 2026 02:03:34 -0000 /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 2.1.1 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz 2.1.0 Mon, 24 Aug 2026 02:03:31 -0000 Mon, 24 Aug 2026 04:38:50 -0000 biology subread http://www.freshports.org/biology/subread/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 http://www.freshports.org/biology/stacks/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks Mon, 24 Aug 2026 03:28:44 -0000 biology stacks Mon, 24 Aug 2026 02:03:47 -0000 2.68 2.69 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 lnphost devel Mon, 24 Aug 2026 03:48:41 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost http://www.freshports.org/devel/lnphost/ http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip 1.0 Mon, 24 Aug 2026 02:10:09 -0000 1.0a