/ New distfiles found via the portscout scanner Sun, 19 Apr 2026 09:50:23 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port devel/R-cran-optparse: version 1.7.5 to 1.8.2 jwb@freebsd.org devel/R-cran-optparse/1.7.5/1.8.2 Sat, 18 Apr 2026 03:44:12 -0000 Sun, 19 Apr 2026 02:08:11 -0000 1.7.5 http://www.freshports.org/devel/R-cran-optparse/ https://stat.ethz.ch/CRAN/src/contrib/optparse_1.8.2.tar.gz devel 1.8.2 R-cran-optparse Sun, 19 Apr 2026 03:07:59 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2FR-cran-optparse /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.21 to 1.23 jwb@freebsd.org science/orthanc-dicomweb/1.21/1.23 Thu, 16 Apr 2026 03:44:19 -0000 https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.23.tar.gz http://www.freshports.org/science/orthanc-dicomweb/ science orthanc-dicomweb Sun, 19 Apr 2026 03:11:25 -0000 1.23 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb Sun, 19 Apr 2026 02:25:02 -0000 1.21 /jwb@freebsd.org.html Update found for port science/orthanc-postgresql: version 10.0 to 10.1 jwb@freebsd.org science/orthanc-postgresql/10.0/10.1 Wed, 15 Apr 2026 03:07:30 -0000 science http://www.freshports.org/science/orthanc-postgresql/ https://orthanc.uclouvain.be/downloads/sources/orthanc-postgresql/OrthancPostgreSQL-10.1.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-postgresql Sun, 19 Apr 2026 03:37:38 -0000 orthanc-postgresql 10.1 10.0 Sun, 19 Apr 2026 02:25:35 -0000 /jwb@freebsd.org.html Update found for port science/orthanc: version 1.12.10 to 1.12.11 jwb@freebsd.org science/orthanc/1.12.10/1.12.11 Wed, 15 Apr 2026 03:06:43 -0000 science https://orthanc.uclouvain.be/downloads/sources/orthanc/Orthanc-1.12.11.tar.gz http://www.freshports.org/science/orthanc/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc Sun, 19 Apr 2026 03:31:06 -0000 orthanc 1.12.11 1.12.10 Sun, 19 Apr 2026 02:25:25 -0000 /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.37.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.37.0 Fri, 10 Apr 2026 03:30:12 -0000 net http://www.freshports.org/net/py-google-cloud-pubsub/ https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.37.0.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub 2.37.0 py-google-cloud-pubsub Sun, 19 Apr 2026 03:31:18 -0000 2.32.0 Sun, 19 Apr 2026 02:23:42 -0000 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.43.0 jwb@freebsd.org science/csvtk/0.36.0/v0.43.0 Thu, 9 Apr 2026 02:38:41 -0000 0.36.0 Sun, 19 Apr 2026 02:25:17 -0000 science https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.43.0?dummy=/ http://www.freshports.org/science/csvtk/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk csvtk Sun, 19 Apr 2026 02:43:40 -0000 v0.43.0 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 496 jwb@freebsd.org biology/ucsc-userapps/474/496 Wed, 8 Apr 2026 03:08:34 -0000 474 Sun, 19 Apr 2026 02:03:06 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps ucsc-userapps Sun, 19 Apr 2026 02:58:34 -0000 496 biology http://www.freshports.org/biology/ucsc-userapps/ https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v496.src.tgz /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.81 jwb@freebsd.org biology/bbmap/39.34/39.81 Sun, 29 Mar 2026 03:34:29 -0000 39.34 Sun, 19 Apr 2026 02:03:05 -0000 biology http://www.freshports.org/biology/bbmap/ https://phoenixnap.dl.sourceforge.net/project/bbmap/BBMap_39.81.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap bbmap Sun, 19 Apr 2026 03:47:03 -0000 39.81 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Fri, 27 Mar 2026 02:40:38 -0000 3.4.1 Sun, 19 Apr 2026 02:03:17 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools vdb-4760-2.9.7 Sun, 19 Apr 2026 03:15:17 -0000 sra-tools biology http://www.freshports.org/biology/sra-tools/ https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.2.0 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.2.0 Wed, 25 Mar 2026 03:12:30 -0000 r4.2.0 Sun, 19 Apr 2026 03:04:30 -0000 mongo-cxx-driver http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.2.0?dummy=/ http://www.freshports.org/devel/mongo-cxx-driver/ devel Sun, 19 Apr 2026 02:08:01 -0000 4.0.0 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 21 Mar 2026 03:22:09 -0000 http://www.freshports.org/biology/vcflib/ https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.15?dummy=/ biology vcflib Sun, 19 Apr 2026 03:03:15 -0000 v1.0.15 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib Sun, 19 Apr 2026 02:03:16 -0000 1.0.13 /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v1.11.4 jwb@freebsd.org biology/salmon/1.10.3/v1.11.4 Thu, 12 Mar 2026 03:05:16 -0000 1.10.3 Sun, 19 Apr 2026 02:03:05 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon salmon Sun, 19 Apr 2026 03:31:23 -0000 v1.11.4 biology https://codeload.github.com/https://api.github.com/repos/COMBINE-lab/salmon/v1.11.4?dummy=/ http://www.freshports.org/biology/salmon/ /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 0.5.2 Sun, 19 Apr 2026 02:03:15 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 0.5.4 py-pydeseq2 Sun, 19 Apr 2026 03:15:59 -0000 biology http://www.freshports.org/biology/py-pydeseq2/ https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 biology http://www.freshports.org/biology/py-pywgsim/ https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim 0.6.0 Sun, 19 Apr 2026 03:17:32 -0000 py-pywgsim 0.5.2 Sun, 19 Apr 2026 02:03:06 -0000 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 Sun, 19 Apr 2026 02:03:13 -0000 1.3.9 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ http://www.freshports.org/biology/freebayes/ biology freebayes Sun, 19 Apr 2026 02:40:05 -0000 v1.3.10 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 1.20 Sun, 19 Apr 2026 02:03:09 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha Sun, 19 Apr 2026 03:03:57 -0000 bio-mocha 1.21 biology https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ http://www.freshports.org/biology/bio-mocha/ /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 biology https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz http://www.freshports.org/biology/py-dna-features-viewer/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer 3.1.5 Sun, 19 Apr 2026 03:33:49 -0000 py-dna-features-viewer 3.1.3 Sun, 19 Apr 2026 02:03:07 -0000 /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 2.1.0 Sun, 19 Apr 2026 02:03:05 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread 2.1.1 Sun, 19 Apr 2026 03:11:25 -0000 subread biology https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz http://www.freshports.org/biology/subread/ /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 Sun, 19 Apr 2026 03:20:49 -0000 mmseqs2 vnatbiotech biology https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ http://www.freshports.org/biology/mmseqs2/ 17-b804f Sun, 19 Apr 2026 02:03:10 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 Sun, 19 Apr 2026 02:03:19 -0000 2.68 http://www.freshports.org/biology/stacks/ https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz biology stacks Sun, 19 Apr 2026 03:21:01 -0000 2.69 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 2.7.8 Sun, 19 Apr 2026 02:03:14 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent ddocent Sun, 19 Apr 2026 03:06:28 -0000 v2.9.8 biology http://www.freshports.org/biology/ddocent/ https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 1.3.5 Sun, 19 Apr 2026 02:03:17 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost paper bifrost Sun, 19 Apr 2026 02:58:54 -0000 biology http://www.freshports.org/biology/bifrost/ https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 Sun, 19 Apr 2026 02:28:38 -0000 0.5.8 0.5.9 spcm Sun, 19 Apr 2026 02:58:17 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ http://www.freshports.org/sysutils/spcm/ sysutils /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 3.5.2 Sun, 19 Apr 2026 02:03:15 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools 3.5.3 py-deeptools Sun, 19 Apr 2026 03:18:28 -0000 biology http://www.freshports.org/biology/py-deeptools/ https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 g20150417 Sun, 19 Apr 2026 02:03:05 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc bfc Sun, 19 Apr 2026 03:15:14 -0000 submitted-v1 biology https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ http://www.freshports.org/biology/bfc/ /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 1.0a Sun, 19 Apr 2026 02:08:47 -0000 devel http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip http://www.freshports.org/devel/lnphost/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost 1.0 lnphost Sun, 19 Apr 2026 03:31:54 -0000