/ New distfiles found via the portscout scanner Thu, 11 Dec 2025 23:51:31 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port science/csvtk: version 0.35.0 to v0.39.0 jwb@freebsd.org science/csvtk/0.35.0/v0.39.0 Tue, 9 Dec 2025 03:46:29 -0000 0.35.0 science Thu, 11 Dec 2025 03:02:17 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk v0.39.0 http://www.freshports.org/science/csvtk/ csvtk Thu, 11 Dec 2025 02:29:11 -0000 https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.39.0?dummy=/ /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.56 jwb@freebsd.org biology/bbmap/39.34/39.56 Mon, 8 Dec 2025 04:09:55 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap Thu, 11 Dec 2025 03:23:34 -0000 biology 39.34 https://sinalbr.dl.sourceforge.net/project/bbmap/BBMap_39.56.tar.gz Thu, 11 Dec 2025 02:03:14 -0000 http://www.freshports.org/biology/bbmap/ bbmap 39.56 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 491 jwb@freebsd.org biology/ucsc-userapps/474/491 Thu, 4 Dec 2025 03:35:06 -0000 http://www.freshports.org/biology/ucsc-userapps/ ucsc-userapps 491 https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v491.src.tgz Thu, 11 Dec 2025 02:03:15 -0000 biology 474 Thu, 11 Dec 2025 03:22:46 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.2.1 to 3.3.0 jwb@freebsd.org biology/sra-tools/3.2.1/3.3.0 Wed, 3 Dec 2025 03:48:01 -0000 Thu, 11 Dec 2025 02:03:26 -0000 https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/3.3.0?dummy=/ 3.3.0 http://www.freshports.org/biology/sra-tools/ sra-tools Thu, 11 Dec 2025 03:45:24 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools 3.2.1 biology /jwb@freebsd.org.html Update found for port science/orthanc-postgresql: version 9.0 to 10.0 jwb@freebsd.org science/orthanc-postgresql/9.0/10.0 Wed, 3 Dec 2025 03:44:19 -0000 orthanc-postgresql http://www.freshports.org/science/orthanc-postgresql/ 10.0 https://orthanc.uclouvain.be/downloads/sources/orthanc-postgresql/OrthancPostgreSQL-10.0.tar.gz Thu, 11 Dec 2025 02:29:31 -0000 science 9.0 Thu, 11 Dec 2025 03:30:07 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-postgresql /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.21 to 1.22 jwb@freebsd.org science/orthanc-dicomweb/1.21/1.22 Wed, 3 Dec 2025 02:44:27 -0000 Thu, 11 Dec 2025 02:41:49 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb 1.21 science Thu, 11 Dec 2025 02:28:54 -0000 https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.22.tar.gz 1.22 http://www.freshports.org/science/orthanc-dicomweb/ orthanc-dicomweb /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.33.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.33.0 Fri, 31 Oct 2025 03:12:52 -0000 net 2.32.0 Thu, 11 Dec 2025 03:41:49 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub http://www.freshports.org/net/py-google-cloud-pubsub/ py-google-cloud-pubsub 2.33.0 https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.33.0.tar.gz Thu, 11 Dec 2025 02:27:31 -0000 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.3 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.3 Wed, 29 Oct 2025 02:54:23 -0000 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.3.tar.gz Thu, 11 Dec 2025 02:03:25 -0000 py-pydeseq2 http://www.freshports.org/biology/py-pydeseq2/ 0.5.3 Thu, 11 Dec 2025 02:51:38 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 biology 0.5.2 /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.1.4 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.1.4 Sat, 11 Oct 2025 02:42:38 -0000 https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.1.4?dummy=/ Thu, 11 Dec 2025 02:08:26 -0000 mongo-cxx-driver http://www.freshports.org/devel/mongo-cxx-driver/ r4.1.4 Thu, 11 Dec 2025 03:11:40 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver devel 4.0.0 /jwb@freebsd.org.html Update found for port biology/samtools: version 1.22 to 1.22.1 jwb@freebsd.org biology/samtools/1.22/1.22.1 Wed, 16 Jul 2025 03:57:57 -0000 1.22 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsamtools Thu, 11 Dec 2025 03:11:55 -0000 1.22.1 http://www.freshports.org/biology/samtools/ samtools Thu, 11 Dec 2025 02:03:25 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/samtools/1.22.1?dummy=/ /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 Thu, 11 Dec 2025 03:12:19 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim biology 0.5.2 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz Thu, 11 Dec 2025 02:03:15 -0000 py-pywgsim http://www.freshports.org/biology/py-pywgsim/ 0.6.0 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 http://www.freshports.org/biology/freebayes/ freebayes v1.3.10 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ Thu, 11 Dec 2025 02:03:23 -0000 biology 1.3.9 Thu, 11 Dec 2025 03:45:28 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ Thu, 11 Dec 2025 02:03:18 -0000 http://www.freshports.org/biology/bio-mocha/ bio-mocha 1.21 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha Thu, 11 Dec 2025 03:08:12 -0000 biology 1.20 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.14 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.14 Mon, 19 May 2025 02:38:55 -0000 Thu, 11 Dec 2025 02:03:25 -0000 https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.14?dummy=/ v1.0.14 vcflib http://www.freshports.org/biology/vcflib/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib Thu, 11 Dec 2025 03:34:29 -0000 1.0.13 biology /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer Thu, 11 Dec 2025 03:02:39 -0000 3.1.3 biology Thu, 11 Dec 2025 02:03:16 -0000 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz 3.1.5 http://www.freshports.org/biology/py-dna-features-viewer/ py-dna-features-viewer /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 biology 2.1.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread Thu, 11 Dec 2025 03:48:38 -0000 http://www.freshports.org/biology/subread/ subread 2.1.1 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz Thu, 11 Dec 2025 02:03:14 -0000 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 biology 17-b804f http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 Thu, 11 Dec 2025 02:58:33 -0000 mmseqs2 http://www.freshports.org/biology/mmseqs2/ vnatbiotech https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ Thu, 11 Dec 2025 02:03:19 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 Thu, 11 Dec 2025 02:03:29 -0000 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz 2.69 stacks http://www.freshports.org/biology/stacks/ Thu, 11 Dec 2025 02:54:52 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks 2.68 biology /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 biology 2.7.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent Thu, 11 Dec 2025 02:54:30 -0000 http://www.freshports.org/biology/ddocent/ ddocent v2.9.8 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ Thu, 11 Dec 2025 02:03:23 -0000 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 1.3.5 biology Thu, 11 Dec 2025 03:05:41 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost paper http://www.freshports.org/biology/bifrost/ bifrost Thu, 11 Dec 2025 02:03:26 -0000 https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.6.1 to 1.7.4 jwb@freebsd.org devel/py-rich-click/1.6.1/1.7.4 Wed, 13 Mar 2024 03:44:49 -0000 devel 1.6.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click Thu, 11 Dec 2025 03:11:06 -0000 py-rich-click http://www.freshports.org/devel/py-rich-click/ 1.7.4 https://pypi.org/packages/source/r/rich-click/rich-click-1.7.4.tar.gz Thu, 11 Dec 2025 02:12:14 -0000 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 Thu, 11 Dec 2025 03:22:06 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm sysutils 0.5.8 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ Thu, 11 Dec 2025 02:32:42 -0000 http://www.freshports.org/sysutils/spcm/ spcm 0.5.9 /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools Thu, 11 Dec 2025 03:26:53 -0000 3.5.2 biology Thu, 11 Dec 2025 02:03:25 -0000 https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz 3.5.3 http://www.freshports.org/biology/py-deeptools/ py-deeptools /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 Thu, 11 Dec 2025 02:03:14 -0000 https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ submitted-v1 http://www.freshports.org/biology/bfc/ bfc Thu, 11 Dec 2025 03:05:20 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc g20150417 biology /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip Thu, 11 Dec 2025 02:09:13 -0000 http://www.freshports.org/devel/lnphost/ lnphost 1.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost Thu, 11 Dec 2025 02:58:23 -0000 devel 1.0a