/ New distfiles found via the portscout scanner Fri, 6 Feb 2026 10:21:50 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.35.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.35.0 Fri, 6 Feb 2026 03:15:06 -0000 2.32.0 Fri, 6 Feb 2026 03:15:06 -0000 py-google-cloud-pubsub http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub net http://www.freshports.org/net/py-google-cloud-pubsub/ 2.35.0 https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.35.0.tar.gz Fri, 6 Feb 2026 02:27:35 -0000 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 493 jwb@freebsd.org biology/ucsc-userapps/474/493 Thu, 5 Feb 2026 02:56:23 -0000 Fri, 6 Feb 2026 03:25:49 -0000 474 ucsc-userapps biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps 493 http://www.freshports.org/biology/ucsc-userapps/ https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v493.src.tgz Fri, 6 Feb 2026 02:03:16 -0000 /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.68 jwb@freebsd.org biology/bbmap/39.34/39.68 Tue, 3 Feb 2026 02:55:46 -0000 39.68 http://www.freshports.org/biology/bbmap/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap biology Fri, 6 Feb 2026 02:03:15 -0000 https://deac-fra.dl.sourceforge.net/project/bbmap/BBMap_39.68.tar.gz bbmap 39.34 Fri, 6 Feb 2026 02:41:47 -0000 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz Fri, 6 Feb 2026 02:03:26 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 0.5.4 http://www.freshports.org/biology/py-pydeseq2/ Fri, 6 Feb 2026 03:21:11 -0000 0.5.2 py-pydeseq2 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.40.0 jwb@freebsd.org science/csvtk/0.36.0/v0.40.0 Sun, 11 Jan 2026 02:58:43 -0000 Fri, 6 Feb 2026 03:08:34 -0000 0.36.0 csvtk science http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk v0.40.0 http://www.freshports.org/science/csvtk/ https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.40.0?dummy=/ Fri, 6 Feb 2026 02:29:19 -0000 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.3.0 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.3.0/vdb-4760-2.9.7 Thu, 18 Dec 2025 03:45:07 -0000 Fri, 6 Feb 2026 03:57:00 -0000 3.3.0 sra-tools biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools vdb-4760-2.9.7 http://www.freshports.org/biology/sra-tools/ https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ Fri, 6 Feb 2026 02:03:27 -0000 /jwb@freebsd.org.html Update found for port biology/samtools: version 1.22 to 1.23 jwb@freebsd.org biology/samtools/1.22/1.23 Thu, 18 Dec 2025 02:59:10 -0000 samtools 1.22 Fri, 6 Feb 2026 03:52:49 -0000 1.23 http://www.freshports.org/biology/samtools/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsamtools biology Fri, 6 Feb 2026 02:03:26 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/samtools/1.23?dummy=/ /jwb@freebsd.org.html Update found for port biology/bcftools: version 1.22 to 1.23 jwb@freebsd.org biology/bcftools/1.22/1.23 Wed, 17 Dec 2025 02:54:50 -0000 Fri, 6 Feb 2026 03:50:15 -0000 1.22 bcftools https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.23?dummy=/ Fri, 6 Feb 2026 02:03:20 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbcftools 1.23 http://www.freshports.org/biology/bcftools/ /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.21 to 1.22 jwb@freebsd.org science/orthanc-dicomweb/1.21/1.22 Wed, 3 Dec 2025 02:44:27 -0000 orthanc-dicomweb Fri, 6 Feb 2026 03:40:27 -0000 1.21 1.22 http://www.freshports.org/science/orthanc-dicomweb/ science http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb Fri, 6 Feb 2026 02:29:01 -0000 https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.22.tar.gz /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.1.4 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.1.4 Sat, 11 Oct 2025 02:42:38 -0000 4.0.0 Fri, 6 Feb 2026 03:57:29 -0000 mongo-cxx-driver http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver devel r4.1.4 http://www.freshports.org/devel/mongo-cxx-driver/ https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.1.4?dummy=/ Fri, 6 Feb 2026 02:08:26 -0000 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 Fri, 6 Feb 2026 02:03:16 -0000 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz http://www.freshports.org/biology/py-pywgsim/ 0.6.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim biology py-pywgsim 0.5.2 Fri, 6 Feb 2026 03:20:12 -0000 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 v1.3.10 http://www.freshports.org/biology/freebayes/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes Fri, 6 Feb 2026 02:03:23 -0000 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ freebayes Fri, 6 Feb 2026 04:01:20 -0000 1.3.9 /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 1.20 Fri, 6 Feb 2026 04:02:27 -0000 bio-mocha http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha biology 1.21 http://www.freshports.org/biology/bio-mocha/ https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ Fri, 6 Feb 2026 02:03:18 -0000 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.14 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.14 Mon, 19 May 2025 02:38:55 -0000 http://www.freshports.org/biology/vcflib/ v1.0.14 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib biology Fri, 6 Feb 2026 02:03:26 -0000 https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.14?dummy=/ vcflib 1.0.13 Fri, 6 Feb 2026 03:45:16 -0000 /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer biology http://www.freshports.org/biology/py-dna-features-viewer/ 3.1.5 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz Fri, 6 Feb 2026 02:03:17 -0000 3.1.3 Fri, 6 Feb 2026 03:31:20 -0000 py-dna-features-viewer /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 subread Fri, 6 Feb 2026 03:05:51 -0000 2.1.0 2.1.1 http://www.freshports.org/biology/subread/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread Fri, 6 Feb 2026 02:03:15 -0000 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 http://www.freshports.org/biology/mmseqs2/ vnatbiotech http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 biology Fri, 6 Feb 2026 02:03:20 -0000 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ mmseqs2 17-b804f Fri, 6 Feb 2026 03:02:45 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 Fri, 6 Feb 2026 02:03:30 -0000 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz 2.69 http://www.freshports.org/biology/stacks/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks stacks Fri, 6 Feb 2026 03:06:01 -0000 2.68 /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 Fri, 6 Feb 2026 02:03:24 -0000 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ v2.9.8 http://www.freshports.org/biology/ddocent/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent ddocent Fri, 6 Feb 2026 03:09:27 -0000 2.7.8 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 paper http://www.freshports.org/biology/bifrost/ biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost Fri, 6 Feb 2026 02:03:28 -0000 https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ bifrost Fri, 6 Feb 2026 02:59:34 -0000 1.3.5 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 spcm Fri, 6 Feb 2026 04:01:07 -0000 0.5.8 http://www.freshports.org/sysutils/spcm/ 0.5.9 sysutils http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm Fri, 6 Feb 2026 02:32:52 -0000 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz Fri, 6 Feb 2026 02:03:25 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools http://www.freshports.org/biology/py-deeptools/ 3.5.3 Fri, 6 Feb 2026 03:07:49 -0000 3.5.2 py-deeptools /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 bfc Fri, 6 Feb 2026 03:41:26 -0000 g20150417 Fri, 6 Feb 2026 02:03:15 -0000 https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ http://www.freshports.org/biology/bfc/ submitted-v1 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 lnphost Fri, 6 Feb 2026 03:01:03 -0000 1.0a http://www.freshports.org/devel/lnphost/ 1.0 devel http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost Fri, 6 Feb 2026 02:09:14 -0000 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip