/ New distfiles found via the portscout scanner Sun, 1 Feb 2026 08:20:25 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.9.6 to 1.9.7 jwb@freebsd.org devel/py-rich-click/1.9.6/1.9.7 Sun, 1 Feb 2026 03:05:35 -0000 py-rich-click 1.9.6 devel http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click http://www.freshports.org/devel/py-rich-click/ Sun, 1 Feb 2026 03:05:35 -0000 https://pypi.org/packages/source/r/rich_click/rich_click-1.9.7.tar.gz 1.9.7 Sun, 1 Feb 2026 02:09:42 -0000 /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.65 jwb@freebsd.org biology/bbmap/39.34/39.65 Thu, 29 Jan 2026 03:52:14 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap Sun, 1 Feb 2026 03:19:48 -0000 http://www.freshports.org/biology/bbmap/ 39.65 https://sinalbr.dl.sourceforge.net/project/bbmap/BBMap_39.65.tar.gz Sun, 1 Feb 2026 02:02:52 -0000 bbmap 39.34 biology /jwb@freebsd.org.html Update found for port biology/hisat2: version 2.2.1 to v2.2.2 jwb@freebsd.org biology/hisat2/2.2.1/v2.2.2 Thu, 29 Jan 2026 02:59:25 -0000 biology hisat2 2.2.1 https://codeload.github.com/https://api.github.com/repos/DaehwanKimLab/hisat2/v2.2.2?dummy=/ v2.2.2 Sun, 1 Feb 2026 02:03:01 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fhisat2 Sun, 1 Feb 2026 03:07:19 -0000 http://www.freshports.org/biology/hisat2/ /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 0.5.2 py-pydeseq2 biology Sun, 1 Feb 2026 03:28:30 -0000 http://www.freshports.org/biology/py-pydeseq2/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 Sun, 1 Feb 2026 02:03:01 -0000 0.5.4 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 492 jwb@freebsd.org biology/ucsc-userapps/474/492 Fri, 16 Jan 2026 03:21:19 -0000 Sun, 1 Feb 2026 03:46:13 -0000 http://www.freshports.org/biology/ucsc-userapps/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps Sun, 1 Feb 2026 02:02:53 -0000 492 https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v492.src.tgz 474 ucsc-userapps biology /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.40.0 jwb@freebsd.org science/csvtk/0.36.0/v0.40.0 Sun, 11 Jan 2026 02:58:43 -0000 Sun, 1 Feb 2026 02:34:09 -0000 http://www.freshports.org/science/csvtk/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk Sun, 1 Feb 2026 02:21:31 -0000 v0.40.0 https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.40.0?dummy=/ 0.36.0 csvtk science /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.3.0 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.3.0/vdb-4760-2.9.7 Thu, 18 Dec 2025 03:45:07 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools http://www.freshports.org/biology/sra-tools/ Sun, 1 Feb 2026 03:04:19 -0000 vdb-4760-2.9.7 https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ Sun, 1 Feb 2026 02:03:03 -0000 sra-tools 3.3.0 biology /jwb@freebsd.org.html Update found for port biology/samtools: version 1.22 to 1.23 jwb@freebsd.org biology/samtools/1.22/1.23 Thu, 18 Dec 2025 02:59:10 -0000 samtools 1.22 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsamtools http://www.freshports.org/biology/samtools/ Sun, 1 Feb 2026 03:09:33 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/samtools/1.23?dummy=/ 1.23 Sun, 1 Feb 2026 02:03:01 -0000 /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.34.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.34.0 Wed, 17 Dec 2025 03:23:27 -0000 2.32.0 py-google-cloud-pubsub net Sun, 1 Feb 2026 03:19:48 -0000 http://www.freshports.org/net/py-google-cloud-pubsub/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub Sun, 1 Feb 2026 02:20:10 -0000 2.34.0 https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.34.0.tar.gz /jwb@freebsd.org.html Update found for port biology/bcftools: version 1.22 to 1.23 jwb@freebsd.org biology/bcftools/1.22/1.23 Wed, 17 Dec 2025 02:54:50 -0000 biology bcftools 1.22 1.23 https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.23?dummy=/ Sun, 1 Feb 2026 02:02:57 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbcftools http://www.freshports.org/biology/bcftools/ Sun, 1 Feb 2026 02:50:19 -0000 /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.21 to 1.22 jwb@freebsd.org science/orthanc-dicomweb/1.21/1.22 Wed, 3 Dec 2025 02:44:27 -0000 1.21 orthanc-dicomweb science Sun, 1 Feb 2026 03:41:04 -0000 http://www.freshports.org/science/orthanc-dicomweb/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb Sun, 1 Feb 2026 02:21:17 -0000 https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.22.tar.gz 1.22 /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.1.4 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.1.4 Sat, 11 Oct 2025 02:42:38 -0000 Sun, 1 Feb 2026 02:07:01 -0000 https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.1.4?dummy=/ r4.1.4 http://www.freshports.org/devel/mongo-cxx-driver/ Sun, 1 Feb 2026 03:47:49 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver devel 4.0.0 mongo-cxx-driver /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 py-pywgsim 0.5.2 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim Sun, 1 Feb 2026 02:39:29 -0000 http://www.freshports.org/biology/py-pywgsim/ 0.6.0 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz Sun, 1 Feb 2026 02:02:53 -0000 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 Sun, 1 Feb 2026 02:41:04 -0000 http://www.freshports.org/biology/freebayes/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes Sun, 1 Feb 2026 02:02:59 -0000 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ v1.3.10 1.3.9 freebayes biology /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 bio-mocha 1.20 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha Sun, 1 Feb 2026 02:38:44 -0000 http://www.freshports.org/biology/bio-mocha/ 1.21 https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ Sun, 1 Feb 2026 02:02:55 -0000 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.14 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.14 Mon, 19 May 2025 02:38:55 -0000 Sun, 1 Feb 2026 02:03:02 -0000 https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.14?dummy=/ v1.0.14 http://www.freshports.org/biology/vcflib/ Sun, 1 Feb 2026 03:23:07 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib biology 1.0.13 vcflib /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 Sun, 1 Feb 2026 03:11:19 -0000 http://www.freshports.org/biology/py-dna-features-viewer/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer Sun, 1 Feb 2026 02:02:54 -0000 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz 3.1.5 3.1.3 py-dna-features-viewer biology /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 2.1.1 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz Sun, 1 Feb 2026 02:02:52 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread http://www.freshports.org/biology/subread/ Sun, 1 Feb 2026 03:36:53 -0000 biology subread 2.1.0 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 biology mmseqs2 17-b804f vnatbiotech https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ Sun, 1 Feb 2026 02:02:56 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 http://www.freshports.org/biology/mmseqs2/ Sun, 1 Feb 2026 02:44:51 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 biology stacks 2.68 2.69 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz Sun, 1 Feb 2026 02:03:05 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks Sun, 1 Feb 2026 03:31:22 -0000 http://www.freshports.org/biology/stacks/ /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 Sun, 1 Feb 2026 02:03:00 -0000 v2.9.8 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ http://www.freshports.org/biology/ddocent/ Sun, 1 Feb 2026 03:21:45 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent biology 2.7.8 ddocent /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 bifrost 1.3.5 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost http://www.freshports.org/biology/bifrost/ Sun, 1 Feb 2026 03:10:19 -0000 paper https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ Sun, 1 Feb 2026 02:03:03 -0000 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 0.5.8 spcm sysutils Sun, 1 Feb 2026 02:43:55 -0000 http://www.freshports.org/sysutils/spcm/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm Sun, 1 Feb 2026 02:24:14 -0000 0.5.9 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 Sun, 1 Feb 2026 02:03:01 -0000 https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz 3.5.3 Sun, 1 Feb 2026 03:43:38 -0000 http://www.freshports.org/biology/py-deeptools/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools biology 3.5.2 py-deeptools /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 Sun, 1 Feb 2026 02:02:52 -0000 submitted-v1 https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ http://www.freshports.org/biology/bfc/ Sun, 1 Feb 2026 03:12:14 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc biology g20150417 bfc /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 1.0a lnphost devel http://www.freshports.org/devel/lnphost/ Sun, 1 Feb 2026 03:34:29 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost Sun, 1 Feb 2026 02:07:36 -0000 1.0 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip