/ New distfiles found via the portscout scanner Wed, 29 Apr 2026 05:47:12 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port devel/R-cran-getopt: version 1.20.4 to 1.21.1 jwb@freebsd.org devel/R-cran-getopt/1.20.4/1.21.1 Tue, 28 Apr 2026 03:17:18 -0000 1.21.1 Wed, 29 Apr 2026 02:09:16 -0000 https://stat.ethz.ch/CRAN/src/contrib/getopt_1.21.1.tar.gz 1.20.4 Wed, 29 Apr 2026 02:47:11 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2FR-cran-getopt devel R-cran-getopt http://www.freshports.org/devel/R-cran-getopt/ /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.82 jwb@freebsd.org biology/bbmap/39.34/39.82 Tue, 28 Apr 2026 03:14:38 -0000 39.82 Wed, 29 Apr 2026 02:02:53 -0000 https://ixpeering.dl.sourceforge.net/project/bbmap/BBMap_39.82.tar.gz 39.34 Wed, 29 Apr 2026 03:28:10 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap http://www.freshports.org/biology/bbmap/ biology bbmap /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.3.0 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.3.0 Thu, 23 Apr 2026 03:54:22 -0000 https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.3.0?dummy=/ Wed, 29 Apr 2026 02:07:00 -0000 r4.3.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver Wed, 29 Apr 2026 04:00:08 -0000 4.0.0 http://www.freshports.org/devel/mongo-cxx-driver/ mongo-cxx-driver devel /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 1.00.0 https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 Wed, 29 Apr 2026 02:03:37 -0000 cutecom comms http://www.freshports.org/comms/cutecom/ 0.60.0 Wed, 29 Apr 2026 03:30:54 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.37.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.37.0 Fri, 10 Apr 2026 03:30:12 -0000 Wed, 29 Apr 2026 02:20:24 -0000 https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.37.0.tar.gz 2.37.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub Wed, 29 Apr 2026 03:59:00 -0000 2.32.0 http://www.freshports.org/net/py-google-cloud-pubsub/ net py-google-cloud-pubsub /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.43.0 jwb@freebsd.org science/csvtk/0.36.0/v0.43.0 Thu, 9 Apr 2026 02:38:41 -0000 v0.43.0 Wed, 29 Apr 2026 02:22:34 -0000 https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.43.0?dummy=/ 0.36.0 Wed, 29 Apr 2026 02:56:55 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk http://www.freshports.org/science/csvtk/ science csvtk /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 496 jwb@freebsd.org biology/ucsc-userapps/474/496 Wed, 8 Apr 2026 03:08:34 -0000 474 Wed, 29 Apr 2026 02:32:09 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps http://www.freshports.org/biology/ucsc-userapps/ biology ucsc-userapps 496 Wed, 29 Apr 2026 02:02:54 -0000 https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v496.src.tgz /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Fri, 27 Mar 2026 02:40:38 -0000 https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ Wed, 29 Apr 2026 02:03:03 -0000 vdb-4760-2.9.7 Wed, 29 Apr 2026 02:45:28 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools 3.4.1 sra-tools biology http://www.freshports.org/biology/sra-tools/ /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 21 Mar 2026 03:22:09 -0000 v1.0.15 https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.15?dummy=/ Wed, 29 Apr 2026 02:03:03 -0000 http://www.freshports.org/biology/vcflib/ vcflib biology 1.0.13 Wed, 29 Apr 2026 03:11:54 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v1.11.4 jwb@freebsd.org biology/salmon/1.10.3/v1.11.4 Thu, 12 Mar 2026 03:05:16 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon Wed, 29 Apr 2026 03:10:48 -0000 1.10.3 salmon biology http://www.freshports.org/biology/salmon/ https://codeload.github.com/https://api.github.com/repos/COMBINE-lab/salmon/v1.11.4?dummy=/ Wed, 29 Apr 2026 02:02:53 -0000 v1.11.4 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 Wed, 29 Apr 2026 03:59:45 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 0.5.2 py-pydeseq2 biology http://www.freshports.org/biology/py-pydeseq2/ Wed, 29 Apr 2026 02:03:02 -0000 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz 0.5.4 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 0.5.2 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim Wed, 29 Apr 2026 02:37:43 -0000 py-pywgsim biology http://www.freshports.org/biology/py-pywgsim/ 0.6.0 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz Wed, 29 Apr 2026 02:02:54 -0000 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 http://www.freshports.org/biology/freebayes/ freebayes biology Wed, 29 Apr 2026 03:12:00 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes 1.3.9 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ Wed, 29 Apr 2026 02:03:00 -0000 v1.3.10 /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 1.20 Wed, 29 Apr 2026 03:59:22 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha http://www.freshports.org/biology/bio-mocha/ bio-mocha biology 1.21 Wed, 29 Apr 2026 02:02:56 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 Wed, 29 Apr 2026 02:02:55 -0000 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz 3.1.5 Wed, 29 Apr 2026 03:45:26 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer 3.1.3 http://www.freshports.org/biology/py-dna-features-viewer/ biology py-dna-features-viewer /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 2.1.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread Wed, 29 Apr 2026 03:51:44 -0000 subread biology http://www.freshports.org/biology/subread/ 2.1.1 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz Wed, 29 Apr 2026 02:02:53 -0000 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 vnatbiotech https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ Wed, 29 Apr 2026 02:02:57 -0000 17-b804f Wed, 29 Apr 2026 03:22:21 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 biology mmseqs2 http://www.freshports.org/biology/mmseqs2/ /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 http://www.freshports.org/biology/stacks/ biology stacks 2.68 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks Wed, 29 Apr 2026 03:51:18 -0000 2.69 Wed, 29 Apr 2026 02:03:06 -0000 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 Wed, 29 Apr 2026 03:01:04 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent 2.7.8 http://www.freshports.org/biology/ddocent/ biology ddocent Wed, 29 Apr 2026 02:03:01 -0000 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ v2.9.8 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 biology bifrost http://www.freshports.org/biology/bifrost/ Wed, 29 Apr 2026 03:42:23 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost 1.3.5 https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ Wed, 29 Apr 2026 02:03:03 -0000 paper /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 Wed, 29 Apr 2026 02:27:12 -0000 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ 0.5.9 http://www.freshports.org/sysutils/spcm/ spcm sysutils Wed, 29 Apr 2026 03:48:34 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm 0.5.8 /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 http://www.freshports.org/biology/bfc/ bfc biology Wed, 29 Apr 2026 02:36:15 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc g20150417 Wed, 29 Apr 2026 02:02:53 -0000 https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ submitted-v1 /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 1.0 Wed, 29 Apr 2026 02:07:35 -0000 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip 1.0a Wed, 29 Apr 2026 02:36:56 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost http://www.freshports.org/devel/lnphost/ lnphost devel