/ New distfiles found via the portscout scanner Sun, 27 Sep 2026 11:34:18 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v2.8.0 jwb@freebsd.org biology/salmon/1.10.3/v2.8.0 Sat, 26 Sep 2026 04:38:23 -0000 v2.8.0 https://api.github.com/repos/COMBINE-lab/salmon/tarball/v2.8.0 Sun, 27 Sep 2026 03:44:47 -0000 1.10.3 biology salmon http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon Sun, 27 Sep 2026 02:04:06 -0000 http://www.freshports.org/biology/salmon/ /jwb@freebsd.org.html Update found for port science/orthanc-postgresql: version 10.3 to 11.0 jwb@freebsd.org science/orthanc-postgresql/10.3/11.0 Sun, 20 Sep 2026 03:20:20 -0000 Sun, 27 Sep 2026 04:01:59 -0000 10.3 11.0 https://orthanc.uclouvain.be/downloads/sources/orthanc-postgresql/OrthancPostgreSQL-11.0.tar.gz Sun, 27 Sep 2026 02:36:49 -0000 http://www.freshports.org/science/orthanc-postgresql/ orthanc-postgresql science http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-postgresql /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.5.3 to r4.6.0 jwb@freebsd.org devel/mongo-cxx-driver/4.5.3/r4.6.0 Thu, 17 Sep 2026 04:17:07 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver mongo-cxx-driver devel http://www.freshports.org/devel/mongo-cxx-driver/ Sun, 27 Sep 2026 02:10:19 -0000 https://api.github.com/repos/mongodb/mongo-cxx-driver/tarball/r4.6.0 r4.6.0 4.5.3 Sun, 27 Sep 2026 03:30:14 -0000 /jwb@freebsd.org.html Update found for port www/py-choreographer: version 1.3.0 to 1.4.0 jwb@freebsd.org www/py-choreographer/1.3.0/1.4.0 Thu, 17 Sep 2026 03:01:15 -0000 Sun, 27 Sep 2026 03:44:36 -0000 1.3.0 1.4.0 https://pypi.org/packages/source/c/choreographer/choreographer-1.4.0.tar.gz Sun, 27 Sep 2026 02:43:35 -0000 http://www.freshports.org/www/py-choreographer/ py-choreographer www http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=www%2Fpy-choreographer /jwb@freebsd.org.html Update found for port science/csvtk: version 0.37.0 to v0.48.0 jwb@freebsd.org science/csvtk/0.37.0/v0.48.0 Wed, 9 Sep 2026 03:34:34 -0000 science csvtk http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk Sun, 27 Sep 2026 02:36:28 -0000 http://www.freshports.org/science/csvtk/ v0.48.0 https://api.github.com/repos/golang/sys/tarball/refs/tags/v0.48.0 Sun, 27 Sep 2026 04:43:39 -0000 0.37.0 /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.6 to 4.0.0 jwb@freebsd.org biology/py-deeptools/3.5.6/4.0.0 Sun, 6 Sep 2026 03:26:18 -0000 http://www.freshports.org/biology/py-deeptools/ Sun, 27 Sep 2026 02:04:20 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools biology py-deeptools 3.5.6 Sun, 27 Sep 2026 03:49:06 -0000 https://pypi.org/packages/source/d/deeptools/deeptools-4.0.0.tar.gz 4.0.0 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.9 to paper jwb@freebsd.org biology/bifrost/1.3.9/paper Wed, 12 Aug 2026 04:01:36 -0000 1.3.9 Sun, 27 Sep 2026 03:36:29 -0000 https://api.github.com/repos/pmelsted/bifrost/tarball/paper paper http://www.freshports.org/biology/bifrost/ Sun, 27 Sep 2026 02:04:22 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost biology bifrost /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sat, 20 Jun 2026 19:25:28 -0000 vnatbiotech https://api.github.com/repos/soedinglab/MMseqs2/tarball/vNatBiotech Sun, 27 Sep 2026 03:39:27 -0000 17-b804f biology mmseqs2 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 Sun, 27 Sep 2026 02:04:13 -0000 http://www.freshports.org/biology/mmseqs2/ /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Sat, 20 Jun 2026 18:46:14 -0000 Sun, 27 Sep 2026 02:49:34 -0000 g20150417 submitted-v1 https://api.github.com/repos/lh3/bfc/tarball/refs/tags/submitted-v1 Sun, 27 Sep 2026 02:04:07 -0000 http://www.freshports.org/biology/bfc/ bfc biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 20 Jun 2026 18:45:48 -0000 Sun, 27 Sep 2026 03:53:25 -0000 1.0.13 v1.0.15 https://api.github.com/repos/vcflib/vcflib/tarball/v1.0.15 Sun, 27 Sep 2026 02:04:21 -0000 http://www.freshports.org/biology/vcflib/ vcflib biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Sat, 20 Jun 2026 18:12:59 -0000 http://www.freshports.org/biology/sra-tools/ Sun, 27 Sep 2026 02:04:22 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools biology sra-tools 3.4.1 Sun, 27 Sep 2026 04:15:03 -0000 https://api.github.com/repos/ncbi/sra-tools/tarball/refs/tags/VDB-4760-2.9.7 vdb-4760-2.9.7 /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 1.00.0 0.60.0 Sun, 27 Sep 2026 04:43:58 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom comms cutecom http://www.freshports.org/comms/cutecom/ Sun, 27 Sep 2026 02:05:11 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 Sun, 27 Sep 2026 03:43:03 -0000 2.68 2.69 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz Sun, 27 Sep 2026 02:04:25 -0000 http://www.freshports.org/biology/stacks/ biology stacks http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks