/ New distfiles found via the portscout scanner Thu, 9 Apr 2026 08:11:36 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.43.0 jwb@freebsd.org science/csvtk/0.36.0/v0.43.0 Thu, 9 Apr 2026 02:38:41 -0000 https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.43.0?dummy=/ Thu, 9 Apr 2026 02:38:41 -0000 0.36.0 science Thu, 9 Apr 2026 02:26:37 -0000 http://www.freshports.org/science/csvtk/ v0.43.0 csvtk http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 496 jwb@freebsd.org biology/ucsc-userapps/474/496 Wed, 8 Apr 2026 03:08:34 -0000 Thu, 9 Apr 2026 02:03:14 -0000 http://www.freshports.org/biology/ucsc-userapps/ 474 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps 496 ucsc-userapps https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v496.src.tgz Thu, 9 Apr 2026 02:43:49 -0000 /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.81 jwb@freebsd.org biology/bbmap/39.34/39.81 Sun, 29 Mar 2026 03:34:29 -0000 Thu, 9 Apr 2026 03:40:04 -0000 https://phoenixnap.dl.sourceforge.net/project/bbmap/BBMap_39.81.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap bbmap 39.81 http://www.freshports.org/biology/bbmap/ Thu, 9 Apr 2026 02:03:13 -0000 biology 39.34 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Fri, 27 Mar 2026 02:40:38 -0000 http://www.freshports.org/biology/sra-tools/ Thu, 9 Apr 2026 02:03:25 -0000 biology 3.4.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools sra-tools vdb-4760-2.9.7 https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ Thu, 9 Apr 2026 03:10:34 -0000 /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.2.0 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.2.0 Wed, 25 Mar 2026 03:12:30 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver r4.2.0 mongo-cxx-driver http://www.freshports.org/devel/mongo-cxx-driver/ Thu, 9 Apr 2026 02:08:24 -0000 4.0.0 devel Thu, 9 Apr 2026 04:03:35 -0000 https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.2.0?dummy=/ /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 21 Mar 2026 03:22:09 -0000 http://www.freshports.org/biology/vcflib/ Thu, 9 Apr 2026 02:03:24 -0000 biology 1.0.13 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib vcflib v1.0.15 https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.15?dummy=/ Thu, 9 Apr 2026 03:13:16 -0000 /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.36.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.36.0 Fri, 13 Mar 2026 04:08:34 -0000 net 2.32.0 Thu, 9 Apr 2026 02:24:57 -0000 http://www.freshports.org/net/py-google-cloud-pubsub/ py-google-cloud-pubsub 2.36.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.36.0.tar.gz Thu, 9 Apr 2026 03:14:27 -0000 /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v1.11.4 jwb@freebsd.org biology/salmon/1.10.3/v1.11.4 Thu, 12 Mar 2026 03:05:16 -0000 1.10.3 biology Thu, 9 Apr 2026 02:03:12 -0000 http://www.freshports.org/biology/salmon/ v1.11.4 salmon http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon https://codeload.github.com/https://api.github.com/repos/COMBINE-lab/salmon/v1.11.4?dummy=/ Thu, 9 Apr 2026 03:59:11 -0000 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 Thu, 9 Apr 2026 03:34:54 -0000 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz 0.5.4 py-pydeseq2 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 0.5.2 biology http://www.freshports.org/biology/py-pydeseq2/ Thu, 9 Apr 2026 02:03:24 -0000 /jwb@freebsd.org.html Update found for port science/orthanc-dicomweb: version 1.21 to 1.22 jwb@freebsd.org science/orthanc-dicomweb/1.21/1.22 Wed, 3 Dec 2025 02:44:27 -0000 Thu, 9 Apr 2026 02:26:21 -0000 http://www.freshports.org/science/orthanc-dicomweb/ science 1.21 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc-dicomweb orthanc-dicomweb 1.22 https://orthanc.uclouvain.be/downloads/sources/orthanc-dicomweb/OrthancDicomWeb-1.22.tar.gz Thu, 9 Apr 2026 02:41:09 -0000 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 0.6.0 py-pywgsim http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim 0.5.2 biology http://www.freshports.org/biology/py-pywgsim/ Thu, 9 Apr 2026 02:03:14 -0000 Thu, 9 Apr 2026 02:45:01 -0000 https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ Thu, 9 Apr 2026 03:50:22 -0000 Thu, 9 Apr 2026 02:03:21 -0000 http://www.freshports.org/biology/freebayes/ biology 1.3.9 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes freebayes v1.3.10 /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha 1.21 bio-mocha Thu, 9 Apr 2026 02:03:16 -0000 http://www.freshports.org/biology/bio-mocha/ 1.20 biology Thu, 9 Apr 2026 02:43:21 -0000 https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 Thu, 9 Apr 2026 03:50:00 -0000 https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer 3.1.5 py-dna-features-viewer Thu, 9 Apr 2026 02:03:15 -0000 http://www.freshports.org/biology/py-dna-features-viewer/ 3.1.3 biology /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 Thu, 9 Apr 2026 03:47:49 -0000 https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz 2.1.1 subread http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread 2.1.0 biology http://www.freshports.org/biology/subread/ Thu, 9 Apr 2026 02:03:13 -0000 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 Thu, 9 Apr 2026 02:03:18 -0000 http://www.freshports.org/biology/mmseqs2/ biology 17-b804f http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 mmseqs2 vnatbiotech https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ Thu, 9 Apr 2026 02:47:12 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 2.69 stacks http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks 2.68 biology http://www.freshports.org/biology/stacks/ Thu, 9 Apr 2026 02:03:28 -0000 Thu, 9 Apr 2026 03:11:36 -0000 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 ddocent v2.9.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent biology 2.7.8 http://www.freshports.org/biology/ddocent/ Thu, 9 Apr 2026 02:03:22 -0000 Thu, 9 Apr 2026 03:39:20 -0000 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 1.3.5 biology Thu, 9 Apr 2026 02:03:25 -0000 http://www.freshports.org/biology/bifrost/ paper bifrost http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ Thu, 9 Apr 2026 02:53:50 -0000 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm 0.5.9 spcm Thu, 9 Apr 2026 02:32:25 -0000 http://www.freshports.org/sysutils/spcm/ 0.5.8 sysutils Thu, 9 Apr 2026 02:45:18 -0000 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz Thu, 9 Apr 2026 03:03:00 -0000 http://www.freshports.org/biology/py-deeptools/ Thu, 9 Apr 2026 02:03:23 -0000 3.5.2 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools 3.5.3 py-deeptools /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 Thu, 9 Apr 2026 03:22:10 -0000 https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ bfc submitted-v1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc biology g20150417 http://www.freshports.org/biology/bfc/ Thu, 9 Apr 2026 02:03:13 -0000 /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost lnphost 1.0 http://www.freshports.org/devel/lnphost/ Thu, 9 Apr 2026 02:09:12 -0000 devel 1.0a Thu, 9 Apr 2026 04:00:35 -0000 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip