/ New distfiles found via the portscout scanner Sat, 4 Jul 2026 07:12:34 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v2.3.1 jwb@freebsd.org biology/salmon/1.10.3/v2.3.1 Fri, 3 Jul 2026 02:39:11 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon Sat, 4 Jul 2026 03:16:11 -0000 https://api.github.com/repos/COMBINE-lab/salmon/tarball/v2.3.1 biology http://www.freshports.org/biology/salmon/ v2.3.1 salmon 1.10.3 Sat, 4 Jul 2026 02:03:25 -0000 /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.4.0 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.4.0 Thu, 25 Jun 2026 03:11:38 -0000 Sat, 4 Jul 2026 02:08:59 -0000 mongo-cxx-driver 4.0.0 Sat, 4 Jul 2026 04:35:32 -0000 devel https://api.github.com/repos/mongodb/mongo-cxx-driver/tarball/r4.4.0 http://www.freshports.org/devel/mongo-cxx-driver/ r4.4.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.93 jwb@freebsd.org biology/bbmap/39.34/39.93 Thu, 25 Jun 2026 03:11:17 -0000 Sat, 4 Jul 2026 02:03:25 -0000 bbmap 39.34 Sat, 4 Jul 2026 03:44:30 -0000 39.93 http://www.freshports.org/biology/bbmap/ biology https://razaoinfo.dl.sourceforge.net/project/bbmap/BBMap_39.93.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap /jwb@freebsd.org.html Update found for port science/csvtk: version 0.37.0 to v0.46.0 jwb@freebsd.org science/csvtk/0.37.0/v0.46.0 Mon, 22 Jun 2026 03:09:21 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk Sat, 4 Jul 2026 03:59:56 -0000 v0.46.0 http://www.freshports.org/science/csvtk/ science https://api.github.com/repos/golang/sys/tarball/refs/tags/v0.46.0 csvtk 0.37.0 Sat, 4 Jul 2026 02:28:11 -0000 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sat, 20 Jun 2026 19:25:28 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 http://www.freshports.org/biology/mmseqs2/ vnatbiotech biology https://api.github.com/repos/soedinglab/MMseqs2/tarball/vNatBiotech Sat, 4 Jul 2026 02:54:05 -0000 17-b804f mmseqs2 Sat, 4 Jul 2026 02:03:31 -0000 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Sat, 20 Jun 2026 19:19:28 -0000 Sat, 4 Jul 2026 02:03:38 -0000 bifrost 1.3.5 Sat, 4 Jul 2026 02:58:10 -0000 paper http://www.freshports.org/biology/bifrost/ biology https://api.github.com/repos/pmelsted/bifrost/tarball/paper http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sat, 20 Jun 2026 19:10:46 -0000 freebayes 1.3.9 Sat, 4 Jul 2026 02:03:35 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes Sat, 4 Jul 2026 04:19:26 -0000 http://www.freshports.org/biology/freebayes/ v1.3.10 biology https://api.github.com/repos/freebayes/freebayes/tarball/v1.3.10 /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Sat, 20 Jun 2026 19:09:34 -0000 Sat, 4 Jul 2026 02:03:35 -0000 2.7.8 ddocent biology https://api.github.com/repos/jpuritz/dDocent/tarball/v2.9.8 http://www.freshports.org/biology/ddocent/ v2.9.8 Sat, 4 Jul 2026 04:39:42 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Sat, 20 Jun 2026 18:46:14 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc Sat, 4 Jul 2026 03:54:35 -0000 http://www.freshports.org/biology/bfc/ submitted-v1 https://api.github.com/repos/lh3/bfc/tarball/refs/tags/submitted-v1 biology bfc g20150417 Sat, 4 Jul 2026 02:03:25 -0000 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 20 Jun 2026 18:45:48 -0000 Sat, 4 Jul 2026 04:24:35 -0000 http://www.freshports.org/biology/vcflib/ v1.0.15 https://api.github.com/repos/vcflib/vcflib/tarball/v1.0.15 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib Sat, 4 Jul 2026 02:03:37 -0000 vcflib 1.0.13 /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Sat, 20 Jun 2026 18:42:16 -0000 Sat, 4 Jul 2026 02:32:51 -0000 0.5.8 spcm https://api.github.com/repos/outpaddling/SPCM/tarball/0.5.9 sysutils 0.5.9 http://www.freshports.org/sysutils/spcm/ Sat, 4 Jul 2026 04:37:27 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Sat, 20 Jun 2026 18:12:59 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools https://api.github.com/repos/ncbi/sra-tools/tarball/refs/tags/VDB-4760-2.9.7 biology vdb-4760-2.9.7 http://www.freshports.org/biology/sra-tools/ Sat, 4 Jul 2026 04:22:08 -0000 3.4.1 sra-tools Sat, 4 Jul 2026 02:03:38 -0000 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 499 jwb@freebsd.org biology/ucsc-userapps/474/499 Thu, 11 Jun 2026 02:44:06 -0000 ucsc-userapps 474 Sat, 4 Jul 2026 02:03:26 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps Sat, 4 Jul 2026 02:53:12 -0000 http://www.freshports.org/biology/ucsc-userapps/ 499 https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v499.src.tgz biology /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.39.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.39.0 Thu, 4 Jun 2026 03:47:44 -0000 2.32.0 py-google-cloud-pubsub Sat, 4 Jul 2026 02:26:27 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub 2.39.0 http://www.freshports.org/net/py-google-cloud-pubsub/ net https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.39.0.tar.gz Sat, 4 Jul 2026 02:56:37 -0000 /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.9.7 to 1.9.8 jwb@freebsd.org devel/py-rich-click/1.9.7/1.9.8 Fri, 29 May 2026 04:04:42 -0000 Sat, 4 Jul 2026 03:11:36 -0000 https://pypi.org/packages/source/r/rich_click/rich_click-1.9.8.tar.gz devel http://www.freshports.org/devel/py-rich-click/ 1.9.8 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click Sat, 4 Jul 2026 02:13:01 -0000 py-rich-click 1.9.7 /jwb@freebsd.org.html Update found for port devel/R-cran-getopt: version 1.20.4 to 1.21.1 jwb@freebsd.org devel/R-cran-getopt/1.20.4/1.21.1 Tue, 28 Apr 2026 03:17:18 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2FR-cran-getopt https://stat.ethz.ch/CRAN/src/contrib/getopt_1.21.1.tar.gz devel 1.21.1 http://www.freshports.org/devel/R-cran-getopt/ Sat, 4 Jul 2026 02:58:26 -0000 1.20.4 R-cran-getopt Sat, 4 Jul 2026 02:12:22 -0000 /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 Sat, 4 Jul 2026 03:16:59 -0000 comms https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 1.00.0 http://www.freshports.org/comms/cutecom/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom Sat, 4 Jul 2026 02:04:19 -0000 cutecom 0.60.0 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 Sat, 4 Jul 2026 02:03:37 -0000 0.5.2 py-pydeseq2 biology https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz 0.5.4 http://www.freshports.org/biology/py-pydeseq2/ Sat, 4 Jul 2026 03:11:08 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 Sat, 4 Jul 2026 02:03:26 -0000 0.5.2 py-pywgsim 0.6.0 http://www.freshports.org/biology/py-pywgsim/ biology https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz Sat, 4 Jul 2026 03:09:12 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 3.1.3 py-dna-features-viewer Sat, 4 Jul 2026 02:03:27 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer 3.1.5 http://www.freshports.org/biology/py-dna-features-viewer/ https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz biology Sat, 4 Jul 2026 04:07:25 -0000 /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 2.1.0 subread Sat, 4 Jul 2026 02:03:25 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread http://www.freshports.org/biology/subread/ 2.1.1 biology https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz Sat, 4 Jul 2026 04:24:11 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks http://www.freshports.org/biology/stacks/ 2.69 biology https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz Sat, 4 Jul 2026 03:58:35 -0000 2.68 stacks Sat, 4 Jul 2026 02:03:41 -0000 /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 1.0a lnphost Sat, 4 Jul 2026 02:09:52 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip devel http://www.freshports.org/devel/lnphost/ 1.0 Sat, 4 Jul 2026 04:19:10 -0000