/ New distfiles found via the portscout scanner Mon, 7 Sep 2026 02:07:00 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.9.8 to 1.9.9 jwb@freebsd.org devel/py-rich-click/1.9.8/1.9.9 Sun, 6 Sep 2026 03:54:30 -0000 devel py-rich-click http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click http://www.freshports.org/devel/py-rich-click/ 1.9.9 Sun, 6 Sep 2026 03:54:30 -0000 1.9.8 https://pypi.org/packages/source/r/rich_click/rich_click-1.9.9.tar.gz Sun, 6 Sep 2026 02:15:29 -0000 /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.6 to 4.0.0 jwb@freebsd.org biology/py-deeptools/3.5.6/4.0.0 Sun, 6 Sep 2026 03:26:18 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools py-deeptools http://www.freshports.org/biology/py-deeptools/ Sun, 6 Sep 2026 03:26:18 -0000 4.0.0 3.5.6 https://pypi.org/packages/source/d/deeptools/deeptools-4.0.0.tar.gz Mon, 7 Sep 2026 02:03:46 -0000 /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v2.7.0 jwb@freebsd.org biology/salmon/1.10.3/v2.7.0 Mon, 31 Aug 2026 03:51:05 -0000 1.10.3 https://api.github.com/repos/COMBINE-lab/salmon/tarball/v2.7.0 biology salmon http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon http://www.freshports.org/biology/salmon/ Sun, 6 Sep 2026 02:56:09 -0000 v2.7.0 Mon, 7 Sep 2026 02:03:35 -0000 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.9 to paper jwb@freebsd.org biology/bifrost/1.3.9/paper Wed, 12 Aug 2026 04:01:36 -0000 Mon, 7 Sep 2026 02:03:48 -0000 1.3.9 https://api.github.com/repos/pmelsted/bifrost/tarball/paper bifrost http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost biology Sun, 6 Sep 2026 04:27:50 -0000 paper http://www.freshports.org/biology/bifrost/ /jwb@freebsd.org.html Update found for port science/csvtk: version 0.37.0 to v0.47.0 jwb@freebsd.org science/csvtk/0.37.0/v0.47.0 Thu, 9 Jul 2026 03:14:28 -0000 Sun, 6 Sep 2026 02:36:40 -0000 http://www.freshports.org/science/csvtk/ v0.47.0 Sun, 6 Sep 2026 03:36:17 -0000 science http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk csvtk https://api.github.com/repos/golang/sys/tarball/refs/tags/v0.47.0 0.37.0 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sat, 20 Jun 2026 19:25:28 -0000 Mon, 7 Sep 2026 02:03:41 -0000 17-b804f https://api.github.com/repos/soedinglab/MMseqs2/tarball/vNatBiotech biology mmseqs2 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 http://www.freshports.org/biology/mmseqs2/ Sun, 6 Sep 2026 03:39:46 -0000 vnatbiotech /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Sat, 20 Jun 2026 18:46:14 -0000 https://api.github.com/repos/lh3/bfc/tarball/refs/tags/submitted-v1 g20150417 Sun, 6 Sep 2026 04:40:42 -0000 submitted-v1 http://www.freshports.org/biology/bfc/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc bfc biology Mon, 7 Sep 2026 02:03:35 -0000 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 20 Jun 2026 18:45:48 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib vcflib http://www.freshports.org/biology/vcflib/ v1.0.15 Sun, 6 Sep 2026 02:50:35 -0000 1.0.13 https://api.github.com/repos/vcflib/vcflib/tarball/v1.0.15 Mon, 7 Sep 2026 02:03:47 -0000 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Sat, 20 Jun 2026 18:12:59 -0000 Mon, 7 Sep 2026 02:03:48 -0000 3.4.1 https://api.github.com/repos/ncbi/sra-tools/tarball/refs/tags/VDB-4760-2.9.7 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools sra-tools http://www.freshports.org/biology/sra-tools/ Sun, 6 Sep 2026 04:33:43 -0000 vdb-4760-2.9.7 /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 0.60.0 Sun, 6 Sep 2026 04:31:49 -0000 1.00.0 http://www.freshports.org/comms/cutecom/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom cutecom comms Mon, 7 Sep 2026 02:04:31 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks stacks biology Sun, 6 Sep 2026 03:18:44 -0000 2.69 http://www.freshports.org/biology/stacks/ 2.68 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz Mon, 7 Sep 2026 02:03:51 -0000