/ New distfiles found via the portscout scanner Sun, 26 Apr 2026 02:58:22 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.3.0 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.3.0 Thu, 23 Apr 2026 03:54:22 -0000 r4.3.0 mongo-cxx-driver 4.0.0 Sat, 25 Apr 2026 03:36:37 -0000 https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.3.0?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver http://www.freshports.org/devel/mongo-cxx-driver/ devel Sun, 26 Apr 2026 02:06:50 -0000 /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 comms Sun, 26 Apr 2026 02:03:30 -0000 http://www.freshports.org/comms/cutecom/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 cutecom 0.60.0 Sat, 25 Apr 2026 03:41:12 -0000 1.00.0 /jwb@freebsd.org.html Update found for port biology/py-py2bit: version 0.3.0 to 1.0.1 jwb@freebsd.org biology/py-py2bit/0.3.0/1.0.1 Wed, 22 Apr 2026 03:17:34 -0000 biology Sun, 26 Apr 2026 02:02:54 -0000 http://www.freshports.org/biology/py-py2bit/ https://pypi.org/packages/source/p/py2bit/py2bit-1.0.1.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-py2bit py-py2bit Sun, 26 Apr 2026 02:43:33 -0000 0.3.0 1.0.1 /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.37.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.37.0 Fri, 10 Apr 2026 03:30:12 -0000 http://www.freshports.org/net/py-google-cloud-pubsub/ Sun, 26 Apr 2026 02:20:00 -0000 net http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.37.0.tar.gz py-google-cloud-pubsub 2.32.0 Sun, 26 Apr 2026 02:37:57 -0000 2.37.0 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.36.0 to v0.43.0 jwb@freebsd.org science/csvtk/0.36.0/v0.43.0 Thu, 9 Apr 2026 02:38:41 -0000 http://www.freshports.org/science/csvtk/ Sun, 26 Apr 2026 02:21:20 -0000 science http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.43.0?dummy=/ csvtk 0.36.0 Sun, 26 Apr 2026 02:40:02 -0000 v0.43.0 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 496 jwb@freebsd.org biology/ucsc-userapps/474/496 Wed, 8 Apr 2026 03:08:34 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v496.src.tgz Sun, 26 Apr 2026 02:02:49 -0000 biology http://www.freshports.org/biology/ucsc-userapps/ 496 Sun, 26 Apr 2026 02:53:42 -0000 474 ucsc-userapps /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.81 jwb@freebsd.org biology/bbmap/39.34/39.81 Sun, 29 Mar 2026 03:34:29 -0000 Sun, 26 Apr 2026 02:02:48 -0000 biology http://www.freshports.org/biology/bbmap/ https://phoenixnap.dl.sourceforge.net/project/bbmap/BBMap_39.81.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap bbmap 39.34 Sat, 25 Apr 2026 03:08:29 -0000 39.81 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Fri, 27 Mar 2026 02:40:38 -0000 vdb-4760-2.9.7 sra-tools Sat, 25 Apr 2026 04:05:41 -0000 3.4.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ Sun, 26 Apr 2026 02:02:58 -0000 biology http://www.freshports.org/biology/sra-tools/ /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 21 Mar 2026 03:22:09 -0000 Sun, 26 Apr 2026 02:02:57 -0000 biology http://www.freshports.org/biology/vcflib/ https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.15?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib 1.0.13 Sat, 25 Apr 2026 03:57:59 -0000 vcflib v1.0.15 /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v1.11.4 jwb@freebsd.org biology/salmon/1.10.3/v1.11.4 Thu, 12 Mar 2026 03:05:16 -0000 biology Sun, 26 Apr 2026 02:02:48 -0000 http://www.freshports.org/biology/salmon/ https://codeload.github.com/https://api.github.com/repos/COMBINE-lab/salmon/v1.11.4?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon 1.10.3 Sun, 26 Apr 2026 02:57:22 -0000 salmon v1.11.4 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.4 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.4 Sat, 24 Jan 2026 03:11:05 -0000 0.5.4 Sat, 25 Apr 2026 03:35:36 -0000 0.5.2 py-pydeseq2 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.4.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 http://www.freshports.org/biology/py-pydeseq2/ Sun, 26 Apr 2026 02:02:57 -0000 biology /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 http://www.freshports.org/biology/py-pywgsim/ Sun, 26 Apr 2026 02:02:49 -0000 biology https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim py-pywgsim Sun, 26 Apr 2026 02:35:31 -0000 0.5.2 0.6.0 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 v1.3.10 freebayes Sat, 25 Apr 2026 03:46:27 -0000 1.3.9 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ http://www.freshports.org/biology/freebayes/ Sun, 26 Apr 2026 02:02:55 -0000 biology /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 1.21 bio-mocha Sat, 25 Apr 2026 02:39:58 -0000 1.20 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ http://www.freshports.org/biology/bio-mocha/ biology Sun, 26 Apr 2026 02:02:51 -0000 /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 Sun, 26 Apr 2026 02:02:50 -0000 biology http://www.freshports.org/biology/py-dna-features-viewer/ https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer Sun, 26 Apr 2026 02:34:00 -0000 3.1.3 py-dna-features-viewer 3.1.5 /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 subread Sat, 25 Apr 2026 03:49:29 -0000 2.1.0 2.1.1 biology Sun, 26 Apr 2026 02:02:48 -0000 http://www.freshports.org/biology/subread/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 biology Sun, 26 Apr 2026 02:02:52 -0000 http://www.freshports.org/biology/mmseqs2/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ 17-b804f Sun, 26 Apr 2026 02:57:17 -0000 mmseqs2 vnatbiotech /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 stacks Sat, 25 Apr 2026 03:08:04 -0000 2.68 2.69 http://www.freshports.org/biology/stacks/ biology Sun, 26 Apr 2026 02:03:00 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 v2.9.8 2.7.8 Sun, 26 Apr 2026 02:43:51 -0000 ddocent http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ http://www.freshports.org/biology/ddocent/ biology Sun, 26 Apr 2026 02:02:56 -0000 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 paper Sat, 25 Apr 2026 03:40:08 -0000 1.3.5 bifrost http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ http://www.freshports.org/biology/bifrost/ Sun, 26 Apr 2026 02:02:58 -0000 biology /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 http://www.freshports.org/sysutils/spcm/ sysutils Sun, 26 Apr 2026 02:26:13 -0000 https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm spcm 0.5.8 Sun, 26 Apr 2026 02:57:56 -0000 0.5.9 /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 3.5.3 Sat, 25 Apr 2026 03:11:32 -0000 3.5.2 py-deeptools http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz http://www.freshports.org/biology/py-deeptools/ biology Sun, 26 Apr 2026 02:02:57 -0000 /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 http://www.freshports.org/biology/bfc/ Sun, 26 Apr 2026 02:02:48 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ bfc Sat, 25 Apr 2026 02:39:48 -0000 g20150417 submitted-v1 /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost devel Sun, 26 Apr 2026 02:07:25 -0000 http://www.freshports.org/devel/lnphost/ 1.0 1.0a Sat, 25 Apr 2026 02:39:35 -0000 lnphost