/ New distfiles found via the portscout scanner Fri, 28 Nov 2025 05:14:37 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port science/orthanc: version 1.12.9 to 1.12.10 jwb@freebsd.org science/orthanc/1.12.9/1.12.10 Thu, 27 Nov 2025 02:29:33 -0000 Fri, 28 Nov 2025 03:47:28 -0000 http://www.freshports.org/science/orthanc/ Fri, 28 Nov 2025 02:23:46 -0000 1.12.9 1.12.10 https://orthanc.uclouvain.be/downloads/sources/orthanc/Orthanc-1.12.10.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Forthanc orthanc science /jwb@freebsd.org.html Update found for port biology/bbmap: version 39.34 to 39.52 jwb@freebsd.org biology/bbmap/39.34/39.52 Mon, 24 Nov 2025 03:10:09 -0000 Fri, 28 Nov 2025 02:02:49 -0000 Fri, 28 Nov 2025 02:40:40 -0000 http://www.freshports.org/biology/bbmap/ bbmap https://gigenet.dl.sourceforge.net/project/bbmap/BBMap_39.52.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbbmap biology 39.34 39.52 /jwb@freebsd.org.html Update found for port biology/ucsc-userapps: version 474 to 490 jwb@freebsd.org biology/ucsc-userapps/474/490 Fri, 14 Nov 2025 02:33:15 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fucsc-userapps https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v490.src.tgz ucsc-userapps biology 474 490 Fri, 28 Nov 2025 02:02:50 -0000 Fri, 28 Nov 2025 02:43:22 -0000 http://www.freshports.org/biology/ucsc-userapps/ /jwb@freebsd.org.html Update found for port science/csvtk: version 0.35.0 to v0.38.0 jwb@freebsd.org science/csvtk/0.35.0/v0.38.0 Sun, 9 Nov 2025 03:02:52 -0000 csvtk http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk https://codeload.github.com/https://api.github.com/repos/golang/sys/tarball/refs/v0.38.0?dummy=/ science 0.35.0 v0.38.0 Fri, 28 Nov 2025 02:23:37 -0000 Fri, 28 Nov 2025 02:53:33 -0000 http://www.freshports.org/science/csvtk/ /jwb@freebsd.org.html Update found for port net/py-google-cloud-pubsub: version 2.32.0 to 2.33.0 jwb@freebsd.org net/py-google-cloud-pubsub/2.32.0/2.33.0 Fri, 31 Oct 2025 03:12:52 -0000 2.32.0 2.33.0 https://pypi.org/packages/source/g/google_cloud_pubsub/google_cloud_pubsub-2.33.0.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=net%2Fpy-google-cloud-pubsub py-google-cloud-pubsub net Fri, 28 Nov 2025 03:29:09 -0000 http://www.freshports.org/net/py-google-cloud-pubsub/ Fri, 28 Nov 2025 02:19:54 -0000 /jwb@freebsd.org.html Update found for port biology/py-pydeseq2: version 0.5.2 to 0.5.3 jwb@freebsd.org biology/py-pydeseq2/0.5.2/0.5.3 Wed, 29 Oct 2025 02:54:23 -0000 http://www.freshports.org/biology/py-pydeseq2/ Fri, 28 Nov 2025 03:16:38 -0000 Fri, 28 Nov 2025 02:02:58 -0000 0.5.3 0.5.2 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pydeseq2 https://pypi.org/packages/source/p/pydeseq2/pydeseq2-0.5.3.tar.gz py-pydeseq2 /jwb@freebsd.org.html Update found for port devel/mongo-cxx-driver: version 4.0.0 to r4.1.4 jwb@freebsd.org devel/mongo-cxx-driver/4.0.0/r4.1.4 Sat, 11 Oct 2025 02:42:38 -0000 devel https://codeload.github.com/https://api.github.com/repos/mongodb/mongo-cxx-driver/r4.1.4?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fmongo-cxx-driver mongo-cxx-driver r4.1.4 4.0.0 Fri, 28 Nov 2025 02:06:51 -0000 http://www.freshports.org/devel/mongo-cxx-driver/ Fri, 28 Nov 2025 03:21:18 -0000 /jwb@freebsd.org.html Update found for port biology/samtools: version 1.22 to 1.22.1 jwb@freebsd.org biology/samtools/1.22/1.22.1 Wed, 16 Jul 2025 03:57:57 -0000 Fri, 28 Nov 2025 02:02:58 -0000 Fri, 28 Nov 2025 03:46:19 -0000 http://www.freshports.org/biology/samtools/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsamtools https://codeload.github.com/https://api.github.com/repos/samtools/samtools/1.22.1?dummy=/ samtools biology 1.22 1.22.1 /jwb@freebsd.org.html Update found for port biology/py-pywgsim: version 0.5.2 to 0.6.0 jwb@freebsd.org biology/py-pywgsim/0.5.2/0.6.0 Fri, 13 Jun 2025 03:19:23 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-pywgsim https://pypi.org/packages/source/p/pywgsim/pywgsim-0.6.0.tar.gz py-pywgsim 0.6.0 0.5.2 Fri, 28 Nov 2025 02:02:50 -0000 http://www.freshports.org/biology/py-pywgsim/ Fri, 28 Nov 2025 03:27:40 -0000 /jwb@freebsd.org.html Update found for port biology/freebayes: version 1.3.9 to v1.3.10 jwb@freebsd.org biology/freebayes/1.3.9/v1.3.10 Sun, 1 Jun 2025 03:46:07 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Ffreebayes https://codeload.github.com/https://api.github.com/repos/freebayes/freebayes/v1.3.10?dummy=/ freebayes v1.3.10 1.3.9 Fri, 28 Nov 2025 02:02:56 -0000 http://www.freshports.org/biology/freebayes/ Fri, 28 Nov 2025 02:49:54 -0000 /jwb@freebsd.org.html Update found for port biology/bio-mocha: version 1.20 to 1.21 jwb@freebsd.org biology/bio-mocha/1.20/1.21 Tue, 27 May 2025 03:32:14 -0000 1.21 1.20 biology bio-mocha https://codeload.github.com/https://api.github.com/repos/samtools/bcftools/1.21?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbio-mocha http://www.freshports.org/biology/bio-mocha/ Fri, 28 Nov 2025 02:40:31 -0000 Fri, 28 Nov 2025 02:02:52 -0000 /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.14 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.14 Mon, 19 May 2025 02:38:55 -0000 Fri, 28 Nov 2025 02:02:58 -0000 Fri, 28 Nov 2025 03:23:47 -0000 http://www.freshports.org/biology/vcflib/ vcflib https://codeload.github.com/https://api.github.com/repos/vcflib/vcflib/v1.0.14?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib biology 1.0.13 v1.0.14 /jwb@freebsd.org.html Update found for port biology/py-dna-features-viewer: version 3.1.3 to 3.1.5 jwb@freebsd.org biology/py-dna-features-viewer/3.1.3/3.1.5 Sat, 10 May 2025 03:00:27 -0000 http://www.freshports.org/biology/py-dna-features-viewer/ Fri, 28 Nov 2025 03:17:14 -0000 Fri, 28 Nov 2025 02:02:51 -0000 3.1.5 3.1.3 biology py-dna-features-viewer https://pypi.org/packages/source/d/dna_features_viewer/dna_features_viewer-3.1.5.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-dna-features-viewer /jwb@freebsd.org.html Update found for port biology/subread: version 2.1.0 to 2.1.1 jwb@freebsd.org biology/subread/2.1.0/2.1.1 Fri, 18 Apr 2025 03:15:15 -0000 2.1.0 2.1.1 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsubread https://versaweb.dl.sourceforge.net/project/subread/subread-2.1.1/subread-2.1.1-source.tar.gz subread biology Fri, 28 Nov 2025 03:46:15 -0000 http://www.freshports.org/biology/subread/ Fri, 28 Nov 2025 02:02:49 -0000 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.2.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.2.1/vdb-4760-2.9.7 Sat, 22 Mar 2025 03:03:00 -0000 Fri, 28 Nov 2025 03:49:57 -0000 http://www.freshports.org/biology/sra-tools/ Fri, 28 Nov 2025 02:02:59 -0000 3.2.1 vdb-4760-2.9.7 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools https://codeload.github.com/https://api.github.com/repos/ncbi/sra-tools/tarball/refs/VDB-4760-2.9.7?dummy=/ sra-tools biology /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sun, 26 Jan 2025 02:38:12 -0000 17-b804f vnatbiotech http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 https://codeload.github.com/https://api.github.com/repos/soedinglab/MMseqs2/vNatBiotech?dummy=/ mmseqs2 biology Fri, 28 Nov 2025 02:53:19 -0000 http://www.freshports.org/biology/mmseqs2/ Fri, 28 Nov 2025 02:02:53 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 http://www.freshports.org/biology/stacks/ Fri, 28 Nov 2025 03:39:51 -0000 Fri, 28 Nov 2025 02:03:01 -0000 2.69 2.68 biology stacks https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks /jwb@freebsd.org.html Update found for port biology/ddocent: version 2.7.8 to v2.9.8 jwb@freebsd.org biology/ddocent/2.7.8/v2.9.8 Fri, 3 May 2024 03:39:47 -0000 https://codeload.github.com/https://api.github.com/repos/jpuritz/dDocent/v2.9.8?dummy=/ http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fddocent ddocent biology 2.7.8 v2.9.8 Fri, 28 Nov 2025 02:02:56 -0000 Fri, 28 Nov 2025 03:18:33 -0000 http://www.freshports.org/biology/ddocent/ /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.5 to paper jwb@freebsd.org biology/bifrost/1.3.5/paper Tue, 19 Mar 2024 03:40:37 -0000 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost https://codeload.github.com/https://api.github.com/repos/pmelsted/bifrost/paper?dummy=/ bifrost paper 1.3.5 Fri, 28 Nov 2025 02:02:59 -0000 http://www.freshports.org/biology/bifrost/ Fri, 28 Nov 2025 02:57:26 -0000 /jwb@freebsd.org.html Update found for port devel/py-rich-click: version 1.6.1 to 1.7.4 jwb@freebsd.org devel/py-rich-click/1.6.1/1.7.4 Wed, 13 Mar 2024 03:44:49 -0000 https://pypi.org/packages/source/r/rich-click/rich-click-1.7.4.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Fpy-rich-click py-rich-click devel 1.6.1 1.7.4 Fri, 28 Nov 2025 02:09:33 -0000 Fri, 28 Nov 2025 02:52:54 -0000 http://www.freshports.org/devel/py-rich-click/ /jwb@freebsd.org.html Update found for port sysutils/spcm: version 0.5.8 to 0.5.9 jwb@freebsd.org sysutils/spcm/0.5.8/0.5.9 Mon, 4 Mar 2024 03:59:06 -0000 sysutils http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=sysutils%2Fspcm https://codeload.github.com/https://api.github.com/repos/outpaddling/SPCM/0.5.9?dummy=/ spcm 0.5.9 0.5.8 Fri, 28 Nov 2025 02:26:32 -0000 http://www.freshports.org/sysutils/spcm/ Fri, 28 Nov 2025 02:39:41 -0000 /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.2 to 3.5.3 jwb@freebsd.org biology/py-deeptools/3.5.2/3.5.3 Wed, 30 Aug 2023 03:19:16 -0000 https://pypi.org/packages/source/d/deepTools/deepTools-3.5.3.tar.gz http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools py-deeptools biology 3.5.2 3.5.3 Fri, 28 Nov 2025 02:02:57 -0000 Fri, 28 Nov 2025 03:42:39 -0000 http://www.freshports.org/biology/py-deeptools/ /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Tue, 24 Aug 2021 04:41:19 -0000 Fri, 28 Nov 2025 03:07:31 -0000 http://www.freshports.org/biology/bfc/ Fri, 28 Nov 2025 02:02:49 -0000 g20150417 submitted-v1 bfc http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc https://codeload.github.com/https://api.github.com/repos/lh3/bfc/tarball/refs/submitted-v1?dummy=/ biology /jwb@freebsd.org.html Update found for port devel/lnphost: version 1.0a to 1.0 jwb@freebsd.org devel/lnphost/1.0a/1.0 Mon, 4 Aug 2014 09:24:33 -0000 Fri, 28 Nov 2025 02:47:58 -0000 http://www.freshports.org/devel/lnphost/ Fri, 28 Nov 2025 02:07:26 -0000 1.0a 1.0 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=devel%2Flnphost http://kaz.dl.sourceforge.net/project/lnphost/OldFiles/lnphost-1.0.zip lnphost devel