/ New distfiles found via the portscout scanner Wed, 9 Sep 2026 01:38:48 +0000 jwb@freebsd.org portscout v0.8.1, by Shaun Amott /jwb@freebsd.org.html Update found for port biology/py-deeptools: version 3.5.6 to 4.0.0 jwb@freebsd.org biology/py-deeptools/3.5.6/4.0.0 Sun, 6 Sep 2026 03:26:18 -0000 4.0.0 biology Tue, 8 Sep 2026 02:03:50 -0000 http://www.freshports.org/biology/py-deeptools/ 3.5.6 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fpy-deeptools Tue, 8 Sep 2026 03:47:16 -0000 py-deeptools https://pypi.org/packages/source/d/deeptools/deeptools-4.0.0.tar.gz /jwb@freebsd.org.html Update found for port biology/salmon: version 1.10.3 to v2.7.0 jwb@freebsd.org biology/salmon/1.10.3/v2.7.0 Mon, 31 Aug 2026 03:51:05 -0000 Tue, 8 Sep 2026 02:03:38 -0000 http://www.freshports.org/biology/salmon/ v2.7.0 biology http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsalmon Tue, 8 Sep 2026 04:27:41 -0000 https://api.github.com/repos/COMBINE-lab/salmon/tarball/v2.7.0 salmon 1.10.3 /jwb@freebsd.org.html Update found for port biology/bifrost: version 1.3.9 to paper jwb@freebsd.org biology/bifrost/1.3.9/paper Wed, 12 Aug 2026 04:01:36 -0000 biology paper http://www.freshports.org/biology/bifrost/ Tue, 8 Sep 2026 02:03:52 -0000 1.3.9 bifrost https://api.github.com/repos/pmelsted/bifrost/tarball/paper http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbifrost Tue, 8 Sep 2026 02:48:34 -0000 /jwb@freebsd.org.html Update found for port science/csvtk: version 0.37.0 to v0.47.0 jwb@freebsd.org science/csvtk/0.37.0/v0.47.0 Thu, 9 Jul 2026 03:14:28 -0000 https://api.github.com/repos/golang/sys/tarball/refs/tags/v0.47.0 csvtk http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=science%2Fcsvtk Tue, 8 Sep 2026 03:40:27 -0000 0.37.0 http://www.freshports.org/science/csvtk/ Tue, 8 Sep 2026 02:28:49 -0000 science v0.47.0 /jwb@freebsd.org.html Update found for port biology/mmseqs2: version 17-b804f to vnatbiotech jwb@freebsd.org biology/mmseqs2/17-b804f/vnatbiotech Sat, 20 Jun 2026 19:25:28 -0000 mmseqs2 https://api.github.com/repos/soedinglab/MMseqs2/tarball/vNatBiotech http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fmmseqs2 Tue, 8 Sep 2026 04:22:56 -0000 17-b804f http://www.freshports.org/biology/mmseqs2/ Tue, 8 Sep 2026 02:03:44 -0000 biology vnatbiotech /jwb@freebsd.org.html Update found for port biology/bfc: version g20150417 to submitted-v1 jwb@freebsd.org biology/bfc/g20150417/submitted-v1 Sat, 20 Jun 2026 18:46:14 -0000 g20150417 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fbfc Tue, 8 Sep 2026 04:02:18 -0000 https://api.github.com/repos/lh3/bfc/tarball/refs/tags/submitted-v1 bfc submitted-v1 biology Tue, 8 Sep 2026 02:03:38 -0000 http://www.freshports.org/biology/bfc/ /jwb@freebsd.org.html Update found for port biology/vcflib: version 1.0.13 to v1.0.15 jwb@freebsd.org biology/vcflib/1.0.13/v1.0.15 Sat, 20 Jun 2026 18:45:48 -0000 v1.0.15 biology Tue, 8 Sep 2026 02:03:51 -0000 http://www.freshports.org/biology/vcflib/ 1.0.13 Tue, 8 Sep 2026 03:58:24 -0000 http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fvcflib vcflib https://api.github.com/repos/vcflib/vcflib/tarball/v1.0.15 /jwb@freebsd.org.html Update found for port biology/sra-tools: version 3.4.1 to vdb-4760-2.9.7 jwb@freebsd.org biology/sra-tools/3.4.1/vdb-4760-2.9.7 Sat, 20 Jun 2026 18:12:59 -0000 https://api.github.com/repos/ncbi/sra-tools/tarball/refs/tags/VDB-4760-2.9.7 sra-tools http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fsra-tools Tue, 8 Sep 2026 03:18:59 -0000 3.4.1 http://www.freshports.org/biology/sra-tools/ Tue, 8 Sep 2026 02:03:52 -0000 biology vdb-4760-2.9.7 /jwb@freebsd.org.html Update found for port comms/cutecom: version 0.60.0 to 1.00.0 jwb@freebsd.org comms/cutecom/0.60.0/1.00.0 Thu, 23 Apr 2026 03:47:40 -0000 0.60.0 https://gitlab.com/cutecom/cutecom/-/archive/v0.60.0-RC1/cutecom-v1.00.0-RC1.tar.bz2 cutecom http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=comms%2Fcutecom Tue, 8 Sep 2026 03:00:12 -0000 comms 1.00.0 http://www.freshports.org/comms/cutecom/ Tue, 8 Sep 2026 02:04:34 -0000 /jwb@freebsd.org.html Update found for port biology/stacks: version 2.68 to 2.69 jwb@freebsd.org biology/stacks/2.68/2.69 Sat, 18 Jan 2025 03:42:59 -0000 biology 2.69 http://www.freshports.org/biology/stacks/ Tue, 8 Sep 2026 02:03:54 -0000 2.68 https://catchenlab.life.illinois.edu/stacks/source/stacks-2.69.tar.gz stacks http://www.freebsd.org/cgi/query-pr-summary.cgi?category=ports&text=biology%2Fstacks Tue, 8 Sep 2026 04:19:19 -0000